Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001276866 18 1482 NP_004439 18 1482 NP_001276865 18 1482 NP_001005862 18 1482 XP_005257197 18 1482 XP_006721828 18 1482 NP_005219 18 1935 NP_001159580 16 5631 NP_057165 16 5631 NP_001159581 16 5631 XP_005262923 16 5631 XP_005262922 16 5631 XP_005262921 16 5631 XP_005262920 16 5631 XP_005262919 16 5631 XP_005262918 16 5631 NP_002522 16 5631 NP_001385 16 7355 NP_003310 15 9605 NP_597676 15 9605 NP_001243779 15 9605 NP_596869 15 9605 NP_001248393 15 9605 NP_997074 15 9605 NP_001248394 15 9605 NP_997078 15 9605 NP_997077 15 9605 NP_997079 15 9605 NP_001248395 15 9605 NP_997080 15 9605 NP_003806 15 9605 XP_005246888 15 9605 XP_006712788 15 9605 XP_006712787 15 9605 XP_006712786 15 9605 NP_001254479 15 9605 NP_597681 15 9605>NP_001276866 Length = 1055 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TSTVQLV Q Sbjct: 791 TSTVQLVTQ 799>NP_004439 Length = 1255 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TSTVQLV Q Sbjct: 791 TSTVQLVTQ 799>NP_001276865 Length = 1240 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TSTVQLV Q Sbjct: 776 TSTVQLVTQ 784>NP_001005862 Length = 1225 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TSTVQLV Q Sbjct: 761 TSTVQLVTQ 769>XP_005257197 Length = 1225 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TSTVQLV Q Sbjct: 761 TSTVQLVTQ 769>XP_006721828 Length = 1336 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TSTVQLV Q Sbjct: 872 TSTVQLVTQ 880>NP_005219 Length = 1210 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TSTVQL+ Q Sbjct: 783 TSTVQLITQ 791>NP_001159580 Length = 1123 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 531 TSTAQLVV 538>NP_057165 Length = 1106 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 531 TSTAQLVV 538>NP_001159581 Length = 777 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 149 TSTAQLVV 156>XP_005262923 Length = 1018 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 149 TSTAQLVV 156>XP_005262922 Length = 1276 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 531 TSTAQLVV 538>XP_005262921 Length = 1309 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 531 TSTAQLVV 538>XP_005262920 Length = 1347 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 531 TSTAQLVV 538>XP_005262919 Length = 1383 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 531 TSTAQLVV 538>XP_005262918 Length = 1400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 TST QLV+ Sbjct: 531 TSTAQLVV 538>NP_002522 Length = 418 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 TSTVQLVIQ 9 T+TV++VIQ Sbjct: 230 TATVKVVIQ 238>NP_001385 Length = 394 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 STVQLVIQ 9 STV LV+Q Sbjct: 122 STVSLVVQ 129>NP_003310 Length = 26926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 4703 TSTAKLVVE 4711>NP_597676 Length = 27051 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 4828 TSTAKLVVE 4836>NP_001243779 Length = 34350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 12127 TSTAKLVVE 12135>NP_596869 Length = 33423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 11200 TSTAKLVVE 11208>NP_001248393 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 222 TKTVELVI 229>NP_997074 Length = 772 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 212 TKTVELVI 219>NP_001248394 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 212 TKTVELVI 219>NP_997078 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 212 TKTVELVI 219>NP_997077 Length = 839 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 212 TKTVELVI 219>NP_997079 Length = 862 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 212 TKTVELVI 219>NP_001248395 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 196 TKTVELVI 203>NP_997080 Length = 863 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 212 TKTVELVI 219>NP_003806 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TSTVQLVI 8 T TV+LVI Sbjct: 212 TKTVELVI 219>XP_005246888 Length = 22663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 440 TSTAKLVVE 448>XP_006712788 Length = 24022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 1799 TSTAKLVVE 1807>XP_006712787 Length = 33978 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 11755 TSTAKLVVE 11763>XP_006712786 Length = 35484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 13261 TSTAKLVVE 13269>NP_001254479 Length = 35991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 13768 TSTAKLVVE 13776>NP_597681 Length = 27118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSTVQLVIQ 9 TST +LV++ Sbjct: 4895 TSTAKLVVE 4903Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.122 0.275 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 241,776 Number of extensions: 275 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |