Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245202 19 665 NP_001245200 19 665 NP_001161091 19 665 NP_000240 19 665 NP_001161090 19 665 NP_001161089 19 665 NP_001245203 19 665 XP_005265223 19 665 XP_005265221 19 665 XP_005265220 19 665 XP_005265218 19 665 NP_001273983 16 5631 NP_003430 16 5631 NP_001273984 16 5631 XP_006716175 16 5631 NP_001004308 16 5631 NP_001231827 16 7355 NP_001074008 16 7355 NP_001180360 15 9605 NP_057051 15 9605 NP_036543 15 9605 NP_001273135 15 9605 NP_055710 15 9605 NP_001005376 15 9605 NP_001005377 15 9605 NP_002650 15 9605 XP_005259047 15 9605 XP_005259046 15 9605 XP_006723304 15 9605 XP_005259045 15 9605 XP_006719740 15 9605 XP_006715443 15 9605 XP_005248732 15 9605 XP_005248731 15 9605 XP_005270795 15 9605>NP_001245202 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 214 TSEMSEKRG 222>NP_001245200 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 455 TSEMSEKRG 463>NP_001161091 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 214 TSEMSEKRG 222>NP_000240 Length = 756 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 455 TSEMSEKRG 463>NP_001161090 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 214 TSEMSEKRG 222>NP_001161089 Length = 658 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 357 TSEMSEKRG 365>NP_001245203 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 214 TSEMSEKRG 222>XP_005265223 Length = 415 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 114 TSEMSEKRG 122>XP_005265221 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 214 TSEMSEKRG 222>XP_005265220 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 214 TSEMSEKRG 222>XP_005265218 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 TSEMS KRG Sbjct: 386 TSEMSEKRG 394>NP_001273983 Length = 527 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TSEMSAKRG 9 TSE SA RG Sbjct: 247 TSEDSASRG 255>NP_003430 Length = 563 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TSEMSAKRG 9 TSE SA RG Sbjct: 283 TSEDSASRG 291>NP_001273984 Length = 350 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TSEMSAKRG 9 TSE SA RG Sbjct: 70 TSEDSASRG 78>XP_006716175 Length = 563 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TSEMSAKRG 9 TSE SA RG Sbjct: 283 TSEDSASRG 291>NP_001004308 Length = 310 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 T+E +AKRG Sbjct: 33 TTENTAKRG 41>NP_001231827 Length = 558 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SEMSAKRG 9 +E+SA+RG Sbjct: 15 NELSARRG 22>NP_001074008 Length = 1101 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SEMSAKR 8 SE+SAKR Sbjct: 604 SELSAKR 610>NP_001180360 Length = 779 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TSEMSAK 7 TSE+SAK Sbjct: 358 TSEISAK 364>NP_057051 Length = 807 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TSEMSAK 7 TSE+SAK Sbjct: 358 TSEISAK 364>NP_036543 Length = 752 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TSEMSAK 7 TSE+SAK Sbjct: 303 TSEISAK 309>NP_001273135 Length = 1327 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EMSAKR 8 EMSAKR Sbjct: 1053 EMSAKR 1058>NP_055710 Length = 1403 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EMSAKR 8 EMSAKR Sbjct: 1129 EMSAKR 1134>NP_001005376 Length = 281 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 +S+MS +RG Sbjct: 122 SSDMSCERG 130>NP_001005377 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 +S+MS +RG Sbjct: 122 SSDMSCERG 130>NP_002650 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 +S+MS +RG Sbjct: 122 SSDMSCERG 130>XP_005259047 Length = 279 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 +S+MS +RG Sbjct: 122 SSDMSCERG 130>XP_005259046 Length = 286 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 +S+MS +RG Sbjct: 122 SSDMSCERG 130>XP_006723304 Length = 310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 +S+MS +RG Sbjct: 97 SSDMSCERG 105>XP_005259045 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSEMSAKRG 9 +S+MS +RG Sbjct: 117 SSDMSCERG 125>XP_006719740 Length = 1863 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 EMSAKRG 9 E+SA+RG Sbjct: 104 ELSARRG 110>XP_006715443 Length = 1327 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EMSAKR 8 EMSAKR Sbjct: 1053 EMSAKR 1058>XP_005248732 Length = 1330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EMSAKR 8 EMSAKR Sbjct: 1056 EMSAKR 1061>XP_005248731 Length = 1365 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EMSAKR 8 EMSAKR Sbjct: 1091 EMSAKR 1096>XP_005270795 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TSEMSAK 7 TSE+SAK Sbjct: 334 TSEISAK 340Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.104 0.245 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 315,023 Number of extensions: 674 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |