Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_001119588 18 1135 NP_001119587 18 1135 NP_001119589 18 1135 NP_001271260 17 3301 NP_001271259 17 3301 XP_006715764 17 3301 XP_006715763 17 3301 XP_006715762 17 3301 XP_005249768 17 3301 XP_006715760 17 3301 XP_006715759 17 3301 XP_006715758 17 3301 XP_005249765 17 3301 XP_006715757 17 3301 XP_006715756 17 3301 XP_006715755 17 3301 NP_037416 17 3301 NP_689534 17 4312 XP_005253360 17 4312 XP_005253359 17 4312 NP_001171441 16 7355 NP_444506 16 7355 NP_001171442 16 7355 NP_001171440 16 7355 NP_005462 16 7355 NP_001137252 16 7355 NP_001035931 16 7355 NP_001035930 16 7355 NP_002769 16 7355 NP_057100 16 7355 XP_005257502 16 7355 XP_005257500 16 7355 XP_006717199 16 7355 XP_006714810 16 7355 XP_005268405 16 7355 XP_005264424 16 7355 NP_001107 15 9605 NP_066988 15 9605 NP_951008 15 9605 XP_005255136 15 9605 XP_005245436 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119588 Length = 209 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 23 TRVRAMAIY 31>NP_001119587 Length = 261 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 23 TRVRAMAIY 31>NP_001119589 Length = 214 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TRV AMAIY Sbjct: 23 TRVRAMAIY 31>NP_001271260 Length = 457 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>NP_001271259 Length = 508 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715764 Length = 260 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715763 Length = 326 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715762 Length = 345 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_005249768 Length = 448 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715760 Length = 469 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715759 Length = 498 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715758 Length = 531 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_005249765 Length = 538 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715757 Length = 551 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715756 Length = 581 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>XP_006715755 Length = 588 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>NP_037416 Length = 494 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRVPAMAIY 9 TR P +AIY Sbjct: 25 TRFPGVAIY 33>NP_689534 Length = 273 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TRVPAMAIY 9 +++PA+AIY Sbjct: 217 SQLPALAIY 225>XP_005253360 Length = 172 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TRVPAMAIY 9 +++PA+AIY Sbjct: 116 SQLPALAIY 124>XP_005253359 Length = 196 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TRVPAMAIY 9 +++PA+AIY Sbjct: 140 SQLPALAIY 148>NP_001171441 Length = 657 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVPAMAIY 9 R+PAMA + Sbjct: 589 RIPAMAAH 596>NP_444506 Length = 693 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVPAMAIY 9 R+PAMA + Sbjct: 625 RIPAMAAH 632>NP_001171442 Length = 656 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVPAMAIY 9 R+PAMA + Sbjct: 588 RIPAMAAH 595>NP_001171440 Length = 678 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVPAMAIY 9 R+PAMA + Sbjct: 610 RIPAMAAH 617>NP_005462 Length = 289 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVPAMAI 8 T+VP MA+ Sbjct: 179 TKVPTMAL 186>NP_001137252 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VPAMAIY 9 VPA AIY Sbjct: 135 VPATAIY 141>NP_001035931 Length = 526 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TR+PA+ ++ Sbjct: 393 TRLPALTVH 401>NP_001035930 Length = 527 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TR+PA+ ++ Sbjct: 394 TRLPALTVH 402>NP_002769 Length = 524 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVPAMAIY 9 TR+PA+ ++ Sbjct: 391 TRLPALTVH 399>NP_057100 Length = 351 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VPAMAIY 9 VPA AIY Sbjct: 127 VPATAIY 133>XP_005257502 Length = 336 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VPAMAIY 9 VPA AIY Sbjct: 112 VPATAIY 118>XP_005257500 Length = 444 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VPAMAIY 9 VPA AIY Sbjct: 220 VPATAIY 226>XP_006717199 Length = 319 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RVPAMA 7 RVPAMA Sbjct: 20 RVPAMA 25>XP_006714810 Length = 289 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVPAMAI 8 T+VP MA+ Sbjct: 179 TKVPTMAL 186>XP_005268405 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVPAMAI 8 T+VP MA+ Sbjct: 208 TKVPTMAL 215>XP_005264424 Length = 424 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVPAMAIY 9 R+PAMA + Sbjct: 356 RIPAMAAH 363>NP_001107 Length = 1353 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VPAMAIY 9 +PA+A+Y Sbjct: 875 LPALAVY 881>NP_066988 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TRVPAMAIY 9 T P MAIY Sbjct: 581 TLEPVMAIY 589>NP_951008 Length = 1086 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 RVPAMAIY 9 R+PA A Y Sbjct: 1065 RLPAQAFY 1072>XP_005255136 Length = 1372 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VPAMAIY 9 +PA+A+Y Sbjct: 894 LPALAVY 900>XP_005245436 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TRVPAMAIY 9 T P MAIY Sbjct: 581 TLEPVMAIY 589Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 461,787 Number of extensions: 609 Number of successful extensions: 50 Number of sequences better than 10000.0: 50 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 50 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |