Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 21 175 XP_006713721 21 175 NP_758953 18 1935 XP_005267411 18 1935 NP_003003 16 7355 NP_001004707 16 7355 NP_001073991 15 9605 NP_694574 15 9605 NP_001171718 15 9605 NP_062565 15 9605 NP_001171715 15 9605 NP_001171720 15 9605 NP_001171714 15 9605 NP_001171717 15 9605 NP_001171716 15 9605 NP_001171719 15 9605 NP_001810 15 9605 NP_003553 15 9605 NP_001158889 15 9605 NP_001258867 15 9605 NP_689558 15 9605 NP_001401 15 9605 XP_005256319 15 9605 XP_006721414 15 9605 XP_006717541 15 9605 XP_006717540 15 9605 XP_006717539 15 9605 XP_006717537 15 9605 XP_005252589 15 9605 XP_006717536 15 9605 XP_006717535 15 9605 XP_006717534 15 9605 XP_005252588 15 9605 XP_005252587 15 9605 XP_005252585 15 9605 XP_005248236 15 9605 XP_005248234 15 9605 NP_005005 15 9605>NP_006209 Length = 1068 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TKTREFKRF 9 TKTREF+RF Sbjct: 972 TKTREFERF 980>XP_006713721 Length = 1068 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TKTREFKRF 9 TKTREF+RF Sbjct: 972 TKTREFERF 980>NP_758953 Length = 422 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKTREFKRF 9 T+T EF+RF Sbjct: 38 TRTLEFRRF 46>XP_005267411 Length = 410 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKTREFKRF 9 T+T EF+RF Sbjct: 26 TRTLEFRRF 34>NP_003003 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KTREFKRF 9 K +EFK F Sbjct: 290 KNKEFKNF 297>NP_001004707 Length = 307 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKTREFKRF 9 ++TRE +RF Sbjct: 18 SQTRELQRF 26>NP_001073991 Length = 1620 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 REFKRF 9 REF+RF Sbjct: 520 REFQRF 525>NP_694574 Length = 896 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 REFKRF 9 REFK+F Sbjct: 158 REFKQF 163>NP_001171718 Length = 1273 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 983 KTREFR 988>NP_062565 Length = 1356 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1066 KTREFR 1071>NP_001171715 Length = 1340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1050 KTREFR 1055>NP_001171720 Length = 1244 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 954 KTREFR 959>NP_001171714 Length = 1353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1063 KTREFR 1068>NP_001171717 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1020 KTREFR 1025>NP_001171716 Length = 1319 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1029 KTREFR 1034>NP_001171719 Length = 1266 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 976 KTREFR 981>NP_001810 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TREFKRF 9 TRE KRF Sbjct: 434 TREEKRF 440>NP_003553 Length = 314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTRE+K Sbjct: 57 KTREYK 62>NP_001158889 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTRE+K Sbjct: 46 KTREYK 51>NP_001258867 Length = 2845 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TREFKR 8 TR+FKR Sbjct: 2013 TRQFKR 2018>NP_689558 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKTREFK 7 TKT++FK Sbjct: 363 TKTQKFK 369>NP_001401 Length = 2778 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TREFKR 8 TR+FKR Sbjct: 1946 TRQFKR 1951>XP_005256319 Length = 678 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 REFKRF 9 REFK+F Sbjct: 158 REFKQF 163>XP_006721414 Length = 810 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 REFKRF 9 REFK+F Sbjct: 72 REFKQF 77>XP_006717541 Length = 1295 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1005 KTREFR 1010>XP_006717540 Length = 1141 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1063 KTREFR 1068>XP_006717539 Length = 1170 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1063 KTREFR 1068>XP_006717537 Length = 1296 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1006 KTREFR 1011>XP_005252589 Length = 1309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1019 KTREFR 1024>XP_006717536 Length = 1314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1024 KTREFR 1029>XP_006717535 Length = 1316 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1026 KTREFR 1031>XP_006717534 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1031 KTREFR 1036>XP_005252588 Length = 1323 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1033 KTREFR 1038>XP_005252587 Length = 1338 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1048 KTREFR 1053>XP_005252585 Length = 1352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KTREFK 7 KTREF+ Sbjct: 1062 KTREFR 1067>XP_005248236 Length = 1262 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 REFKRF 9 REF+RF Sbjct: 520 REFQRF 525>XP_005248234 Length = 1620 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 REFKRF 9 REF+RF Sbjct: 520 REFQRF 525>NP_005005 Length = 421 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KTREFKRF 9 KT+ F+RF Sbjct: 376 KTQVFRRF 383Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 432,131 Number of extensions: 594 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |