Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001167558 20 390 NP_858045 20 390 NP_006525 20 390 NP_001167559 20 390 NP_078966 17 3301 NP_919263 17 3301 XP_006723004 17 3301 XP_006720118 17 3301 XP_006720117 17 3301 XP_006720116 17 3301 XP_005267417 17 3301 NP_000954 17 4312 NP_057396 17 4312 NP_001265506 16 5631 NP_001265507 16 5631 NP_001265505 16 5631 NP_001265504 16 5631 NP_001192202 16 5631 NP_001003801 16 7355 NP_112174 16 7355 NP_001018098 15 9605 NP_060154 15 9605 NP_060550 15 9605 NP_065872 15 9605>NP_001167558 Length = 1423 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TKSKLFLNP 9 TKSKLF NP Sbjct: 347 TKSKLFRNP 355>NP_858045 Length = 1424 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TKSKLFLNP 9 TKSKLF NP Sbjct: 347 TKSKLFRNP 355>NP_006525 Length = 1420 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TKSKLFLNP 9 TKSKLF NP Sbjct: 347 TKSKLFRNP 355>NP_001167559 Length = 1415 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TKSKLFLNP 9 TKSKLF NP Sbjct: 357 TKSKLFRNP 365>NP_078966 Length = 14507 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TKSKLFLNP 9 TKSKL L P Sbjct: 9280 TKSKLSLTP 9288>NP_919263 Length = 488 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KLFLNP 9 KLFLNP Sbjct: 336 KLFLNP 341>XP_006723004 Length = 6443 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TKSKLFLNP 9 TKSKL L P Sbjct: 1194 TKSKLSLTP 1202>XP_006720118 Length = 248 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KLFLNP 9 KLFLNP Sbjct: 96 KLFLNP 101>XP_006720117 Length = 396 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KLFLNP 9 KLFLNP Sbjct: 244 KLFLNP 249>XP_006720116 Length = 396 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KLFLNP 9 KLFLNP Sbjct: 244 KLFLNP 249>XP_005267417 Length = 471 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KLFLNP 9 KLFLNP Sbjct: 319 KLFLNP 324>NP_000954 Length = 604 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TKSKLFLNP 9 T+ KLFL P Sbjct: 61 TRIKLFLKP 69>NP_057396 Length = 641 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TKSKLFLNP 9 TKS F+NP Sbjct: 9 TKSGKFMNP 17>NP_001265506 Length = 140 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TKSKLFL 7 TK+KLFL Sbjct: 105 TKAKLFL 111>NP_001265507 Length = 140 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TKSKLFL 7 TK+KLFL Sbjct: 105 TKAKLFL 111>NP_001265505 Length = 140 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TKSKLFL 7 TK+KLFL Sbjct: 105 TKAKLFL 111>NP_001265504 Length = 140 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TKSKLFL 7 TK+KLFL Sbjct: 105 TKAKLFL 111>NP_001192202 Length = 148 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TKSKLFL 7 TK+KLFL Sbjct: 113 TKAKLFL 119>NP_001003801 Length = 483 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TKSKLF 6 TKSKLF Sbjct: 14 TKSKLF 19>NP_112174 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKLFLN 8 SKLFLN Sbjct: 330 SKLFLN 335>NP_001018098 Length = 3628 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SKLFLNP 9 +KL++NP Sbjct: 303 AKLYMNP 309>NP_060154 Length = 3710 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SKLFLNP 9 +KL++NP Sbjct: 260 AKLYMNP 266>NP_060550 Length = 3585 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SKLFLNP 9 +KL++NP Sbjct: 260 AKLYMNP 266>NP_065872 Length = 3753 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SKLFLNP 9 +KL++NP Sbjct: 303 AKLYMNP 309Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 532,672 Number of extensions: 1070 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |