Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_543154 18 1482 NP_060612 17 3301 XP_005273615 17 3301 XP_006716418 17 3301 XP_005273614 17 3301 XP_005273613 17 3301 XP_005273612 17 3301 NP_060095 16 5631 NP_057345 16 5631 NP_001180542 16 5631 NP_001180539 16 5631 XP_005257484 16 5631 XP_005257483 16 5631 XP_005257482 16 5631 NP_000072 16 7355 NP_000867 16 7355 NP_001258578 16 7355 NP_001258567 16 7355 NP_006515 16 7355 NP_001258568 16 7355 NP_001026915 16 7355 XP_005262047 16 7355 XP_005262046 16 7355 XP_005262045 16 7355 XP_005273087 16 7355 XP_006711794 16 7355 XP_005273086 16 7355 XP_005273085 16 7355 XP_005273084 16 7355 NP_001005276 16 7355 NP_003382 15 9605 NP_001032 15 9605 NP_060821 15 9605 NP_005018 15 9605 NP_003977 15 9605 NP_001182149 15 9605 XP_005269081 15 9605 XP_005253220 15 9605 XP_006718407 15 9605 XP_005253218 15 9605 XP_005253217 15 9605 XP_005253216 15 9605 XP_006716172 15 9605 XP_005249986 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 TKNSVV TT Sbjct: 380 TKNSVVSTT 388>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 TKNSVV TT Sbjct: 175 TKNSVVSTT 183>NP_543154 Length = 325 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TKNSVVYTT 9 TKN VVY T Sbjct: 72 TKNGVVYQT 80>NP_060612 Length = 710 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KN VVY+T Sbjct: 307 KNQVVYST 314>XP_005273615 Length = 508 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KN VVY+T Sbjct: 78 KNQVVYST 85>XP_006716418 Length = 624 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KN VVY+T Sbjct: 194 KNQVVYST 201>XP_005273614 Length = 711 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KN VVY+T Sbjct: 307 KNQVVYST 314>XP_005273613 Length = 736 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KN VVY+T Sbjct: 307 KNQVVYST 314>XP_005273612 Length = 737 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KN VVY+T Sbjct: 307 KNQVVYST 314>NP_060095 Length = 313 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TKNSVVYTT 9 T+N V+Y T Sbjct: 60 TENGVIYQT 68>NP_057345 Length = 453 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 ++NS+ YTT Sbjct: 281 SENSLAYTT 289>NP_001180542 Length = 237 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 ++NS+ YTT Sbjct: 65 SENSLAYTT 73>NP_001180539 Length = 396 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 ++NS+ YTT Sbjct: 281 SENSLAYTT 289>XP_005257484 Length = 296 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 ++NS+ YTT Sbjct: 124 SENSLAYTT 132>XP_005257483 Length = 296 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 ++NS+ YTT Sbjct: 124 SENSLAYTT 132>XP_005257482 Length = 386 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKNSVVYTT 9 ++NS+ YTT Sbjct: 214 SENSLAYTT 222>NP_000072 Length = 3801 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SVVYTT 9 SVVYTT Sbjct: 1742 SVVYTT 1747>NP_000867 Length = 2491 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKNSVVY 7 TKN+V+Y Sbjct: 58 TKNNVLY 64>NP_001258578 Length = 172 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TKNSVVYT 8 TK+ ++YT Sbjct: 148 TKHQIIYT 155>NP_001258567 Length = 287 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TKNSVVYT 8 TK+ ++YT Sbjct: 263 TKHQIIYT 270>NP_006515 Length = 293 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TKNSVVYT 8 TK+ ++YT Sbjct: 269 TKHQIIYT 276>NP_001258568 Length = 319 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TKNSVVYT 8 TK+ ++YT Sbjct: 295 TKHQIIYT 302>NP_001026915 Length = 379 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NSVVYT 8 NSV+YT Sbjct: 358 NSVIYT 363>XP_005262047 Length = 264 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NSVVYT 8 NSV+YT Sbjct: 243 NSVIYT 248>XP_005262046 Length = 309 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NSVVYT 8 NSV+YT Sbjct: 288 NSVIYT 293>XP_005262045 Length = 379 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NSVVYT 8 NSV+YT Sbjct: 358 NSVIYT 363>XP_005273087 Length = 2788 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SVVYTT 9 SVVYTT Sbjct: 1742 SVVYTT 1747>XP_006711794 Length = 3022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SVVYTT 9 SVVYTT Sbjct: 963 SVVYTT 968>XP_005273086 Length = 3264 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SVVYTT 9 SVVYTT Sbjct: 1742 SVVYTT 1747>XP_005273085 Length = 3755 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SVVYTT 9 SVVYTT Sbjct: 1742 SVVYTT 1747>XP_005273084 Length = 3801 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SVVYTT 9 SVVYTT Sbjct: 1742 SVVYTT 1747>NP_001005276 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TKNSVVYT 8 T NS++YT Sbjct: 283 TLNSLIYT 290>NP_003382 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TKNSVVY 7 TKN +VY Sbjct: 264 TKNDLVY 270>NP_001032 Length = 1827 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NSVVYTT 9 NSV++TT Sbjct: 144 NSVLFTT 150>NP_060821 Length = 1430 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KNSVVYT 8 KN V+YT Sbjct: 1358 KNKVLYT 1364>NP_005018 Length = 728 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TKNSVVYTT 9 TK+ V+Y T Sbjct: 665 TKHCVIYRT 673>NP_003977 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSVVYTT 9 N+V YTT Sbjct: 190 NNVAYTT 196>NP_001182149 Length = 546 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KNS +Y+T Sbjct: 32 KNSYLYST 39>XP_005269081 Length = 1389 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KNSVVYT 8 KN V+YT Sbjct: 1358 KNKVLYT 1364>XP_005253220 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSVVYTT 9 N+V YTT Sbjct: 190 NNVAYTT 196>XP_006718407 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSVVYTT 9 N+V YTT Sbjct: 190 NNVAYTT 196>XP_005253218 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSVVYTT 9 N+V YTT Sbjct: 190 NNVAYTT 196>XP_005253217 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSVVYTT 9 N+V YTT Sbjct: 190 NNVAYTT 196>XP_005253216 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NSVVYTT 9 N+V YTT Sbjct: 190 NNVAYTT 196>XP_006716172 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TKNSVVY 7 TKN +VY Sbjct: 235 TKNDLVY 241>XP_005249986 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KNSVVYTT 9 KNS +Y+T Sbjct: 32 KNSYLYST 39Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.109 0.274 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 485,689 Number of extensions: 938 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |