Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005219 20 509 NP_056080 17 4312 NP_001165980 17 4312 NP_001165988 17 4312 NP_001026862 17 4312 NP_005815 17 4312 XP_005250165 17 4312 XP_005246453 17 4312 XP_006712435 17 4312 NP_060827 16 5631 NP_001139669 16 5631 NP_001104262 16 7355 NP_004983 16 7355 NP_981953 16 7355 NP_001182209 16 7355 XP_005274738 16 7355 NP_001070665 15 9605 NP_848658 15 9605 NP_060380 15 9605 XP_006716026 15 9605 XP_006716025 15 9605 XP_006716024 15 9605 XP_005264451 15 9605 XP_006712100 15 9605 XP_005264450 15 9605>NP_005219 Length = 1210 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TKFKKIKVL 9 T+FKKIKVL Sbjct: 710 TEFKKIKVL 718>NP_056080 Length = 733 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KFKKIKV 8 K+KKIKV Sbjct: 228 KYKKIKV 234>NP_001165980 Length = 733 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KFKKIKV 8 K+KKIKV Sbjct: 228 KYKKIKV 234>NP_001165988 Length = 733 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KFKKIKV 8 K+KKIKV Sbjct: 228 KYKKIKV 234>NP_001026862 Length = 441 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 +KFKK+K L Sbjct: 102 SKFKKLKSL 110>NP_005815 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 +KFKK+K L Sbjct: 102 SKFKKLKSL 110>XP_005250165 Length = 441 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 +KFKK+K L Sbjct: 102 SKFKKLKSL 110>XP_005246453 Length = 675 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KFKKIKV 8 K+KKIKV Sbjct: 170 KYKKIKV 176>XP_006712435 Length = 733 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KFKKIKV 8 K+KKIKV Sbjct: 228 KYKKIKV 234>NP_060827 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TKFKKIKVL 9 T FKK+K L Sbjct: 133 TSFKKVKHL 141>NP_001139669 Length = 7081 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TKFKKI 6 TKFKKI Sbjct: 1395 TKFKKI 1400>NP_001104262 Length = 498 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KFKKIK 7 KFKK+K Sbjct: 39 KFKKVK 44>NP_004983 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KFKKIK 7 KFKK+K Sbjct: 27 KFKKVK 32>NP_981953 Length = 791 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KFKKIK 7 KFKK+K Sbjct: 643 KFKKVK 648>NP_001182209 Length = 287 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 ++FKK+K L Sbjct: 64 SRFKKLKYL 72>XP_005274738 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 KFKKIK 7 KFKK+K Sbjct: 27 KFKKVK 32>NP_001070665 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 TKFKKIKV 8 T++KK+K+ Sbjct: 17 TQWKKVKI 24>NP_848658 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 +KF KI+VL Sbjct: 320 SKFCKIRVL 328>NP_060380 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TKFKKI 6 TKFKK+ Sbjct: 166 TKFKKL 171>XP_006716026 Length = 859 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 +KF KI+VL Sbjct: 320 SKFCKIRVL 328>XP_006716025 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 +KF KI+VL Sbjct: 320 SKFCKIRVL 328>XP_006716024 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TKFKKIKVL 9 +KF KI+VL Sbjct: 320 SKFCKIRVL 328>XP_005264451 Length = 240 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TKFKKI 6 TKFKK+ Sbjct: 166 TKFKKL 171>XP_006712100 Length = 379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TKFKKI 6 TKFKK+ Sbjct: 166 TKFKKL 171>XP_005264450 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TKFKKI 6 TKFKK+ Sbjct: 166 TKFKKL 171Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.142 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 381,808 Number of extensions: 481 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |