Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1135 NP_001035957 18 1135 XP_006721990 18 1135 XP_006721989 18 1135 XP_005258041 18 1135 XP_006721988 18 1135 XP_006721987 18 1135 XP_006721986 18 1135 XP_005258040 18 1135 XP_006721985 18 1135 NP_065962 17 2528 NP_002510 17 2528 XP_005250743 17 2528 XP_006716234 17 2528 NP_055935 17 4312 NP_055753 17 4312 XP_006719357 17 4312 XP_006719356 17 4312 XP_006719355 17 4312 XP_006719354 17 4312 XP_006719353 17 4312 NP_001185951 16 7355 NP_055526 16 7355 NP_009130 16 7355 NP_001135995 16 7355 NP_001127878 16 7355 NP_001127877 16 7355 NP_055572 16 7355 NP_612147 16 7355 XP_006721168 16 7355 XP_005255778 16 7355 XP_005255776 16 7355 XP_005250215 16 7355 XP_005250214 16 7355 XP_005250213 16 7355 NP_149094 15 9605 NP_056284 15 9605 NP_060846 15 9605>NP_000258 Length = 2818 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2576 SVSESNVLL 2584>NP_001035957 Length = 2839 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2597 SVSESNVLL 2605>XP_006721990 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2607 SVSESNVLL 2615>XP_006721989 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2607 SVSESNVLL 2615>XP_005258041 Length = 2836 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2576 SVSESNVLL 2584>XP_006721988 Length = 2846 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2586 SVSESNVLL 2594>XP_006721987 Length = 2849 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2607 SVSESNVLL 2615>XP_006721986 Length = 2854 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2594 SVSESNVLL 2602>XP_005258040 Length = 2857 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2597 SVSESNVLL 2605>XP_006721985 Length = 2867 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVS+SNVLL Sbjct: 2607 SVSESNVLL 2615>NP_065962 Length = 1894 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ NVLL Sbjct: 569 SVSQYNVLL 577>NP_002510 Length = 1427 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 SVSQSNV++ Sbjct: 881 SVSQSNVVV 889>XP_005250743 Length = 1894 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ NVLL Sbjct: 569 SVSQYNVLL 577>XP_006716234 Length = 1894 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ NVLL Sbjct: 569 SVSQYNVLL 577>NP_055935 Length = 4169 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVS +NVLL Sbjct: 2216 SVSSNNVLL 2224>NP_055753 Length = 919 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 +VSQSNV++ Sbjct: 603 TVSQSNVVI 611>XP_006719357 Length = 567 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 +VSQSNV++ Sbjct: 210 TVSQSNVVI 218>XP_006719356 Length = 708 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 +VSQSNV++ Sbjct: 603 TVSQSNVVI 611>XP_006719355 Length = 920 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 +VSQSNV++ Sbjct: 603 TVSQSNVVI 611>XP_006719354 Length = 959 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 +VSQSNV++ Sbjct: 603 TVSQSNVVI 611>XP_006719353 Length = 960 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 +VSQSNV++ Sbjct: 603 TVSQSNVVI 611>NP_001185951 Length = 1012 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 S+++SNVLL Sbjct: 294 SLNKSNVLL 302>NP_055526 Length = 991 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 S+++SNVLL Sbjct: 294 SLNKSNVLL 302>NP_009130 Length = 596 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 S+S +N+LL Sbjct: 293 SISSANILL 301>NP_001135995 Length = 535 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 S+S +N+LL Sbjct: 232 SISSANILL 240>NP_001127878 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ+ +LL Sbjct: 283 SVSQNKILL 291>NP_001127877 Length = 456 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ+ +LL Sbjct: 283 SVSQNKILL 291>NP_055572 Length = 1016 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SVSQSNVL 8 S+SQSN++ Sbjct: 234 SISQSNLM 241>NP_612147 Length = 473 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ+ +LL Sbjct: 300 SVSQNKILL 308>XP_006721168 Length = 971 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 S+++SNVLL Sbjct: 294 SLNKSNVLL 302>XP_005255778 Length = 991 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 S+++SNVLL Sbjct: 294 SLNKSNVLL 302>XP_005255776 Length = 1012 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVSQSNVLL 9 S+++SNVLL Sbjct: 294 SLNKSNVLL 302>XP_005250215 Length = 336 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ+ +LL Sbjct: 163 SVSQNKILL 171>XP_005250214 Length = 342 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ+ +LL Sbjct: 169 SVSQNKILL 177>XP_005250213 Length = 454 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVSQSNVLL 9 SVSQ+ +LL Sbjct: 283 SVSQNKILL 291>NP_149094 Length = 686 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VSQSNVLL 9 VSQ N+LL Sbjct: 207 VSQQNLLL 214>NP_056284 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VSQSNVLL 9 VSQ N+LL Sbjct: 231 VSQQNMLL 238>NP_060846 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VSQSNVLL 9 VSQ N+LL Sbjct: 231 VSQQNMLL 238Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.114 0.245 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 285,798 Number of extensions: 297 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |