Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001229854 18 1935 NP_055673 18 1935 XP_005245743 18 1935 XP_005245742 18 1935 XP_006711757 18 1935 XP_005245741 18 1935 NP_004506 17 2528 NP_001254738 17 2528 NP_077816 16 5631 NP_055989 16 5631 NP_115997 16 5631 NP_066015 16 5631 XP_006724404 16 5631 XP_006724403 16 5631 XP_005261845 16 5631 XP_005261844 16 5631 XP_005261843 16 5631 XP_005258381 16 5631 XP_006722580 16 5631 XP_006722579 16 5631 XP_005258380 16 5631 XP_006720682 16 5631 XP_005268318 16 5631 NP_001001852 16 7355 NP_003325 15 9605 NP_695012 15 9605 NP_570848 15 9605 NP_570850 15 9605 NP_570849 15 9605 NP_570844 15 9605 NP_570845 15 9605 NP_001446 15 9605 NP_570846 15 9605 NP_570847 15 9605 NP_056375 15 9605 NP_963853 15 9605 NP_997465 15 9605 XP_005272707 15 9605 XP_005272706 15 9605 XP_005272705 15 9605 XP_005266925 15 9605 XP_005266924 15 9605>NP_001229854 Length = 631 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAA+ HQ Sbjct: 127 SSLAAILHQ 135>NP_055673 Length = 709 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAA+ HQ Sbjct: 205 SSLAAILHQ 213>XP_005245743 Length = 618 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAA+ HQ Sbjct: 205 SSLAAILHQ 213>XP_005245742 Length = 631 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAA+ HQ Sbjct: 127 SSLAAILHQ 135>XP_006711757 Length = 631 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAA+ HQ Sbjct: 127 SSLAAILHQ 135>XP_005245741 Length = 631 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAA+ HQ Sbjct: 127 SSLAAILHQ 135>NP_004506 Length = 390 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSLAAVRH 8 S+LAA+RH Sbjct: 200 SALAAIRH 207>NP_001254738 Length = 352 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSLAAVRH 8 S+LAA+RH Sbjct: 162 SALAAIRH 169>NP_077816 Length = 1499 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SLAAVRHQ 9 SLA RHQ Sbjct: 547 SLAVARHQ 554>NP_055989 Length = 939 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SLAAVRH 8 SLAA+RH Sbjct: 768 SLAALRH 774>NP_115997 Length = 2567 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAAVR + Sbjct: 1166 SSLAAVRRK 1174>NP_066015 Length = 2579 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SLAAVRH 8 SLA+VRH Sbjct: 2315 SLASVRH 2321>XP_006724404 Length = 1442 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAAVR + Sbjct: 1167 SSLAAVRRK 1175>XP_006724403 Length = 2449 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAAVR + Sbjct: 1048 SSLAAVRRK 1056>XP_005261845 Length = 2568 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAAVR + Sbjct: 1167 SSLAAVRRK 1175>XP_005261844 Length = 2568 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAAVR + Sbjct: 1167 SSLAAVRRK 1175>XP_005261843 Length = 2568 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSLAAVRHQ 9 SSLAAVR + Sbjct: 1167 SSLAAVRRK 1175>XP_005258381 Length = 2224 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SLAAVRH 8 SLA+VRH Sbjct: 1960 SLASVRH 1966>XP_006722580 Length = 2532 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SLAAVRH 8 SLA+VRH Sbjct: 2268 SLASVRH 2274>XP_006722579 Length = 2544 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SLAAVRH 8 SLA+VRH Sbjct: 2315 SLASVRH 2321>XP_005258380 Length = 2578 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SLAAVRH 8 SLA+VRH Sbjct: 2314 SLASVRH 2320>XP_006720682 Length = 803 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SLAAVRHQ 9 SLA RHQ Sbjct: 547 SLAVARHQ 554>XP_005268318 Length = 1499 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SLAAVRHQ 9 SLA RHQ Sbjct: 547 SLAVARHQ 554>NP_001001852 Length = 326 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LAAVRH 8 LAAVRH Sbjct: 155 LAAVRH 160>NP_003325 Length = 1058 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LAAVRHQ 9 LAA RHQ Sbjct: 940 LAAPRHQ 946>NP_695012 Length = 1058 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LAAVRHQ 9 LAA RHQ Sbjct: 940 LAAPRHQ 946>NP_570848 Length = 979 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 375 LAALRHE 381>NP_570850 Length = 1015 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 411 LAALRHE 417>NP_570849 Length = 997 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 393 LAALRHE 399>NP_570844 Length = 924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 320 LAALRHE 326>NP_570845 Length = 942 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 338 LAALRHE 344>NP_001446 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSLAAVRHQ 9 SSL + +HQ Sbjct: 563 SSLGSAKHQ 571>NP_570846 Length = 961 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 357 LAALRHE 363>NP_570847 Length = 978 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 374 LAALRHE 380>NP_056375 Length = 960 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LAAVRHQ 9 LAA+RH+ Sbjct: 356 LAALRHE 362>NP_963853 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSLAAVRHQ 9 SSL + +HQ Sbjct: 563 SSLGSAKHQ 571>NP_997465 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLAAVRH 8 SLAA RH Sbjct: 13 SLAAYRH 19>XP_005272707 Length = 1058 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LAAVRHQ 9 LAA RHQ Sbjct: 940 LAAPRHQ 946>XP_005272706 Length = 1064 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LAAVRHQ 9 LAA RHQ Sbjct: 946 LAAPRHQ 952>XP_005272705 Length = 1109 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LAAVRHQ 9 LAA RHQ Sbjct: 991 LAAPRHQ 997>XP_005266925 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSLAAVRHQ 9 SSL + +HQ Sbjct: 343 SSLGSAKHQ 351>XP_005266924 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSLAAVRHQ 9 SSL + +HQ Sbjct: 374 SSLGSAKHQ 382Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.112 0.281 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 397,325 Number of extensions: 524 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |