Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 509 NP_671714 20 509 XP_006715890 20 509 XP_005250160 20 509 XP_005250159 20 509 NP_001254652 17 4312 NP_001241646 17 4312 NP_001135441 17 4312 NP_001135442 17 4312 NP_001341 17 4312 XP_005275411 17 4312 XP_005275275 17 4312 XP_005259249 17 4312 XP_005259248 17 4312 XP_005248917 17 4312 NP_001243757 16 5631 NP_001269255 16 5631 NP_001243756 16 5631 NP_060045 16 5631 NP_001091981 16 5631 NP_001230881 16 5631 NP_004511 16 5631 NP_001230882 16 5631 XP_005256628 16 5631 XP_006721556 16 5631 XP_005256626 16 5631 NP_001278208 16 7355 NP_001278207 16 7355 NP_536723 16 7355 NP_005868 16 7355 NP_001005409 16 7355 NP_001274433 15 9605 NP_001269618 15 9605 NP_076982 15 9605 NP_001269619 15 9605 NP_001269617 15 9605 XP_005252259 15 9605 XP_006717345 15 9605 XP_005252255 15 9605 XP_005252253 15 9605 XP_005252252 15 9605 XP_005252250 15 9605 XP_005246870 15 9605 XP_005246869 15 9605 NP_003822 15 9605 NP_001123917 15 9605 NP_001274432 15 9605 NP_006742 15 9605>NP_005742 Length = 3907 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQMLEMEVE 9 SQMLEM+VE Sbjct: 3131 SQMLEMQVE 3139>NP_671714 Length = 3899 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQMLEMEVE 9 SQMLEM+VE Sbjct: 3123 SQMLEMQVE 3131>XP_006715890 Length = 3860 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQMLEMEVE 9 SQMLEM+VE Sbjct: 3084 SQMLEMQVE 3092>XP_005250160 Length = 3939 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQMLEMEVE 9 SQMLEM+VE Sbjct: 3163 SQMLEMQVE 3171>XP_005250159 Length = 3952 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQMLEMEVE 9 SQMLEM+VE Sbjct: 3176 SQMLEMQVE 3184>NP_001254652 Length = 512 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 QMLEMEVE 9 Q+LE+EVE Sbjct: 27 QVLELEVE 34>NP_001241646 Length = 665 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQ+ E+E+E Sbjct: 489 SQLFELEIE 497>NP_001135441 Length = 740 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQ+ E+E+E Sbjct: 564 SQLFELEIE 572>NP_001135442 Length = 752 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQ+ E+E+E Sbjct: 576 SQLFELEIE 584>NP_001341 Length = 740 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQ+ E+E+E Sbjct: 564 SQLFELEIE 572>XP_005275411 Length = 372 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQ+ E+E+E Sbjct: 196 SQLFELEIE 204>XP_005275275 Length = 372 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQ+ E+E+E Sbjct: 196 SQLFELEIE 204>XP_005259249 Length = 512 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 QMLEMEVE 9 Q+LE+EVE Sbjct: 27 QVLELEVE 34>XP_005259248 Length = 520 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 QMLEMEVE 9 Q+LE+EVE Sbjct: 35 QVLELEVE 42>XP_005248917 Length = 372 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQ+ E+E+E Sbjct: 196 SQLFELEIE 204>NP_001243757 Length = 511 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQM +ME+E Sbjct: 326 SQMRQMELE 334>NP_001269255 Length = 330 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQM +ME+E Sbjct: 145 SQMRQMELE 153>NP_001243756 Length = 511 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQM +ME+E Sbjct: 326 SQMRQMELE 334>NP_060045 Length = 1419 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQM +ME+E Sbjct: 1234 SQMRQMELE 1242>NP_001091981 Length = 744 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SQMLEME 7 SQM+EME Sbjct: 653 SQMVEME 659>NP_001230881 Length = 686 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SQMLEME 7 SQM+EME Sbjct: 595 SQMVEME 601>NP_004511 Length = 706 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SQMLEME 7 SQM+EME Sbjct: 615 SQMVEME 621>NP_001230882 Length = 687 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SQMLEME 7 SQM+EME Sbjct: 596 SQMVEME 602>XP_005256628 Length = 511 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQM +ME+E Sbjct: 326 SQMRQMELE 334>XP_006721556 Length = 1357 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQM +ME+E Sbjct: 1172 SQMRQMELE 1180>XP_005256626 Length = 1388 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 SQM +ME+E Sbjct: 1203 SQMRQMELE 1211>NP_001278208 Length = 217 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 S M+E EVE Sbjct: 100 SNMMEREVE 108>NP_001278207 Length = 305 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 S M+E EVE Sbjct: 188 SNMMEREVE 196>NP_536723 Length = 392 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 S M+E EVE Sbjct: 275 SNMMEREVE 283>NP_005868 Length = 793 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 S+ +EMEVE Sbjct: 320 SEEVEMEVE 328>NP_001005409 Length = 728 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 S+ +EMEVE Sbjct: 255 SEEVEMEVE 263>NP_001274433 Length = 1084 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 +QM MEVE Sbjct: 69 AQMQRMEVE 77>NP_001269618 Length = 781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 561 SQMLSKEVD 569>NP_076982 Length = 854 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 634 SQMLSKEVD 642>NP_001269619 Length = 786 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 566 SQMLSKEVD 574>NP_001269617 Length = 853 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 633 SQMLSKEVD 641>XP_005252259 Length = 555 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 335 SQMLSKEVD 343>XP_006717345 Length = 781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 561 SQMLSKEVD 569>XP_005252255 Length = 786 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 566 SQMLSKEVD 574>XP_005252253 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 595 SQMLSKEVD 603>XP_005252252 Length = 816 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 596 SQMLSKEVD 604>XP_005252250 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 SQML EV+ Sbjct: 604 SQMLSKEVD 612>XP_005246870 Length = 1252 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 +QM MEVE Sbjct: 222 AQMQRMEVE 230>XP_005246869 Length = 1255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 +QM MEVE Sbjct: 222 AQMQRMEVE 230>NP_003822 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLEMEVE 9 +QML+ME + Sbjct: 81 AQMLQMEYD 89>NP_001123917 Length = 1259 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 +QM MEVE Sbjct: 222 AQMQRMEVE 230>NP_001274432 Length = 1237 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 +QM MEVE Sbjct: 222 AQMQRMEVE 230>NP_006742 Length = 1256 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SQMLEMEVE 9 +QM MEVE Sbjct: 222 AQMQRMEVE 230Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.114 0.248 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 449,469 Number of extensions: 635 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |