Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 390 NP_671714 20 390 XP_006715890 20 390 XP_005250160 20 390 XP_005250159 20 390 NP_570925 17 2528 NP_570924 17 2528 NP_570923 17 2528 NP_002841 17 2528 XP_006722884 17 2528 XP_005259667 17 2528 XP_005259666 17 2528 XP_006722883 17 2528 XP_006722882 17 2528 XP_006722881 17 2528 XP_005259664 17 2528 XP_005259663 17 2528 XP_006722880 17 2528 XP_006722879 17 2528 XP_006722878 17 2528 XP_006722877 17 2528 XP_006722876 17 2528 XP_006722875 17 2528 XP_005259658 17 2528 XP_005259657 17 2528 XP_006722874 17 2528 XP_006722873 17 2528 XP_006722872 17 2528 XP_006722871 17 2528 NP_001180416 15 9605 NP_006863 15 9605 NP_001185523 15 9605 NP_758515 15 9605 NP_004220 15 9605 NP_835368 15 9605 NP_001185522 15 9605 NP_835369 15 9605 NP_004471 15 9605 NP_060493 15 9605 NP_569707 15 9605 NP_002831 15 9605 XP_005272757 15 9605 XP_005272756 15 9605 XP_005257998 15 9605 XP_006720160 15 9605 XP_006720159 15 9605 XP_006713751 15 9605 XP_005247655 15 9605 XP_005247654 15 9605 XP_006710864 15 9605 XP_005271139 15 9605 XP_006710863 15 9605 XP_006710862 15 9605 XP_006710861 15 9605 XP_005271138 15 9605 XP_006710860 15 9605 XP_006710859 15 9605 XP_005271137 15 9605 XP_006710858 15 9605 XP_005271136 15 9605 NP_001138424 15 9605>NP_005742 Length = 3907 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQKIETIQF 9 SQKIET+QF Sbjct: 675 SQKIETMQF 683>NP_671714 Length = 3899 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQKIETIQF 9 SQKIET+QF Sbjct: 675 SQKIETMQF 683>XP_006715890 Length = 3860 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQKIETIQF 9 SQKIET+QF Sbjct: 675 SQKIETMQF 683>XP_005250160 Length = 3939 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQKIETIQF 9 SQKIET+QF Sbjct: 675 SQKIETMQF 683>XP_005250159 Length = 3952 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SQKIETIQF 9 SQKIET+QF Sbjct: 675 SQKIETMQF 683>NP_570925 Length = 1505 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>NP_570924 Length = 1910 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>NP_570923 Length = 1501 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>NP_002841 Length = 1948 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722884 Length = 1490 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_005259667 Length = 1497 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_005259666 Length = 1501 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722883 Length = 1510 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722882 Length = 1522 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722881 Length = 1526 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_005259664 Length = 1906 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_005259663 Length = 1910 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722880 Length = 1915 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722879 Length = 1917 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722878 Length = 1924 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722877 Length = 1928 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722876 Length = 1933 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722875 Length = 1935 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_005259658 Length = 1935 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_005259657 Length = 1935 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722874 Length = 1940 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722873 Length = 1944 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722872 Length = 1944 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>XP_006722871 Length = 1944 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SQKIETIQF 9 SQ+ ETI+F Sbjct: 75 SQRFETIEF 83>NP_001180416 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQKIETI 7 SQ+IET+ Sbjct: 153 SQRIETV 159>NP_006863 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQKIETI 7 SQ+IET+ Sbjct: 187 SQRIETV 193>NP_001185523 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQKIETI 7 SQ+IET+ Sbjct: 844 SQRIETV 850>NP_758515 Length = 1182 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQKIETI 7 SQ+IET+ Sbjct: 891 SQRIETV 897>NP_004220 Length = 1454 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QKIETIQF 9 +KIE +QF Sbjct: 81 RKIEIVQF 88>NP_835368 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QKIETIQF 9 +KIET+++ Sbjct: 560 EKIETVKY 567>NP_001185522 Length = 1158 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQKIETI 7 SQ+IET+ Sbjct: 891 SQRIETV 897>NP_835369 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QKIETIQF 9 +KIET+++ Sbjct: 560 EKIETVKY 567>NP_004471 Length = 412 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QKIETIQF 9 +KIET+++ Sbjct: 397 EKIETVKY 404>NP_060493 Length = 1422 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 QKIETI 7 QKIETI Sbjct: 40 QKIETI 45>NP_569707 Length = 1898 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>NP_002831 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_005272757 Length = 1410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QKIETIQF 9 +KIE +QF Sbjct: 81 RKIEIVQF 88>XP_005272756 Length = 1443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QKIETIQF 9 +KIE +QF Sbjct: 81 RKIEIVQF 88>XP_005257998 Length = 733 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QKIETIQF 9 QK+ T+QF Sbjct: 665 QKLFTVQF 672>XP_006720160 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QKIETIQF 9 +KIET+++ Sbjct: 560 EKIETVKY 567>XP_006720159 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QKIETIQF 9 +KIET+++ Sbjct: 560 EKIETVKY 567>XP_006713751 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 QKIETI 7 QKIETI Sbjct: 40 QKIETI 45>XP_005247655 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 QKIETI 7 QKIETI Sbjct: 40 QKIETI 45>XP_005247654 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 QKIETI 7 QKIETI Sbjct: 40 QKIETI 45>XP_006710864 Length = 1729 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_005271139 Length = 1796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_006710863 Length = 1811 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_006710862 Length = 1820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_006710861 Length = 1902 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_005271138 Length = 1909 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_006710860 Length = 1911 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_006710859 Length = 1913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_005271137 Length = 1918 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_006710858 Length = 1922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>XP_005271136 Length = 1922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQKIETIQF 9 SQ+ E I+F Sbjct: 75 SQRFEVIEF 83>NP_001138424 Length = 2172 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQKIETIQ 8 S+KI+T+Q Sbjct: 1086 SRKIQTLQ 1093Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.128 0.309 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 344,599 Number of extensions: 476 Number of successful extensions: 61 Number of sequences better than 10000.0: 61 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 61 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |