Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 20 299 NP_001263689 20 299 NP_001119584 20 299 NP_001119586 20 299 NP_001263625 20 299 NP_001119590 20 299 NP_001263690 20 299 NP_001119585 20 299 NP_001263624 20 299 NP_001032412 17 2528 NP_005318 17 3301 NP_001171634 17 3301 XP_005263029 17 3301 NP_065890 17 4312 XP_005265403 17 4312 NP_073617 16 5631 NP_115971 16 7355 NP_075463 16 7355 NP_291020 16 7355 NP_001184058 16 7355 XP_006719812 16 7355 NP_001093261 16 7355 NP_071433 16 7355 NP_000236 15 9605 NP_001120972 15 9605 NP_002516 15 9605 NP_001095132 15 9605 NP_001243624 15 9605 NP_001229290 15 9605 XP_006716054 15 9605 XP_006716053 15 9605 XP_006716052 15 9605 XP_006716051 15 9605 XP_006714533 15 9605 XP_005248344 15 9605 XP_005270960 15 9605 NP_277019 15 9605 NP_036308 15 9605>NP_000537 Length = 393 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 127 SPALNKMF 134>NP_001263689 Length = 354 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 88 SPALNKMF 95>NP_001119584 Length = 393 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 127 SPALNKMF 134>NP_001119586 Length = 341 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 127 SPALNKMF 134>NP_001263625 Length = 302 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 88 SPALNKMF 95>NP_001119590 Length = 354 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 88 SPALNKMF 95>NP_001263690 Length = 354 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 88 SPALNKMF 95>NP_001119585 Length = 346 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 127 SPALNKMF 134>NP_001263624 Length = 307 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SPALNKMF Sbjct: 88 SPALNKMF 95>NP_001032412 Length = 2649 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SPALNKMFA 9 +PALN +FA Sbjct: 378 TPALNMLFA 386>NP_005318 Length = 314 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SPALNKMFA 9 SP+LNK+ A Sbjct: 290 SPSLNKLVA 298>NP_001171634 Length = 331 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SPALNKMFA 9 SP+LNK+ A Sbjct: 307 SPSLNKLVA 315>XP_005263029 Length = 318 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SPALNKMFA 9 SP+LNK+ A Sbjct: 294 SPSLNKLVA 302>NP_065890 Length = 677 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PALNKMF 8 PALN++F Sbjct: 40 PALNRLF 46>XP_005265403 Length = 707 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PALNKMF 8 PALN++F Sbjct: 40 PALNRLF 46>NP_073617 Length = 391 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ALNKMF 8 ALNKMF Sbjct: 362 ALNKMF 367>NP_115971 Length = 1604 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SPALNKMF 8 SP+ N+MF Sbjct: 1017 SPSTNEMF 1024>NP_075463 Length = 3013 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SPALNKM 7 +P+LNKM Sbjct: 2508 TPSLNKM 2514>NP_291020 Length = 156 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SP+L++MF Sbjct: 44 SPSLDQMF 51>NP_001184058 Length = 156 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SP+L++MF Sbjct: 44 SPSLDQMF 51>XP_006719812 Length = 3019 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SPALNKM 7 +P+LNKM Sbjct: 2508 TPSLNKM 2514>NP_001093261 Length = 76 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SPALNKMF 8 SP+L++MF Sbjct: 44 SPSLDQMF 51>NP_071433 Length = 196 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SPALNKM 7 +PA+NKM Sbjct: 75 TPAVNKM 81>NP_000236 Length = 1390 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PALNKMF 8 PA+NK F Sbjct: 628 PAMNKHF 634>NP_001120972 Length = 1408 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PALNKMF 8 PA+NK F Sbjct: 628 PAMNKHF 634>NP_002516 Length = 1219 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 SPALNKMF 8 +PA NK++ Sbjct: 490 TPAFNKLY 497>NP_001095132 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 SPALNKMF 8 +PA NK++ Sbjct: 422 TPAFNKLY 429>NP_001243624 Length = 1177 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SPALNKMF 8 SP LN+M+ Sbjct: 521 SPTLNEMW 528>NP_001229290 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 SPALNKMF 8 +PA NK++ Sbjct: 358 TPAFNKLY 365>XP_006716054 Length = 960 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PALNKMF 8 PA+NK F Sbjct: 198 PAMNKHF 204>XP_006716053 Length = 960 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PALNKMF 8 PA+NK F Sbjct: 198 PAMNKHF 204>XP_006716052 Length = 1409 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PALNKMF 8 PA+NK F Sbjct: 647 PAMNKHF 653>XP_006716051 Length = 1427 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PALNKMF 8 PA+NK F Sbjct: 647 PAMNKHF 653>XP_006714533 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ALNKMFA 9 A+NKMF+ Sbjct: 110 AVNKMFS 116>XP_005248344 Length = 305 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ALNKMFA 9 A+NKMF+ Sbjct: 254 AVNKMFS 260>XP_005270960 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 SPALNKMF 8 +PA NK++ Sbjct: 185 TPAFNKLY 192>NP_277019 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ALNKMFA 9 A+NKMF+ Sbjct: 254 AVNKMFS 260>NP_036308 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ALNKMFA 9 A+NKMF+ Sbjct: 254 AVNKMFS 260Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.125 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 574,188 Number of extensions: 698 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |