Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 19 869 NP_115824 16 5631 NP_001273308 16 5631 NP_001273309 16 5631 XP_006725079 16 5631 XP_006725078 16 5631 XP_006715643 16 5631 XP_006715642 16 5631 NP_005550 16 7355 NP_001186135 15 9605 XP_006726157 15 9605 XP_005275612 15 9605 XP_005275610 15 9605 XP_006726064 15 9605 XP_005275460 15 9605 XP_006715157 15 9605 XP_005249149 15 9605 NP_002254 15 9605>NP_004251 Length = 1208 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SNRAVARIF 9 S+RAVARIF Sbjct: 1156 SSRAVARIF 1164>NP_115824 Length = 910 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SNRAVARIF 9 +NR ++RIF Sbjct: 108 NNREISRIF 116>NP_001273308 Length = 922 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SNRAVARIF 9 +NR ++RIF Sbjct: 120 NNREISRIF 128>NP_001273309 Length = 933 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SNRAVARIF 9 +NR ++RIF Sbjct: 131 NNREISRIF 139>XP_006725079 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SNRAVARIF 9 +NR ++RIF Sbjct: 108 NNREISRIF 116>XP_006725078 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SNRAVARIF 9 +NR ++RIF Sbjct: 108 NNREISRIF 116>XP_006715643 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SNRAVARIF 9 +NR ++RIF Sbjct: 108 NNREISRIF 116>XP_006715642 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SNRAVARIF 9 +NR ++RIF Sbjct: 108 NNREISRIF 116>NP_005550 Length = 3075 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 NRAVARIF 9 NRA RIF Sbjct: 1644 NRATERIF 1651>NP_001186135 Length = 250 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NRAVARIF 9 N AVAR+F Sbjct: 219 NVAVARLF 226>XP_006726157 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 263 NRAVAR 268>XP_005275612 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 482 NRAVAR 487>XP_005275610 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 523 NRAVAR 528>XP_006726064 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 263 NRAVAR 268>XP_005275460 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 523 NRAVAR 528>XP_006715157 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 263 NRAVAR 268>XP_005249149 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 523 NRAVAR 528>NP_002254 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 NRAVAR 7 NRAVAR Sbjct: 523 NRAVAR 528Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.136 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 229,691 Number of extensions: 174 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |