Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000360 18 1135 XP_005268094 18 1135 NP_115582 16 7355 XP_006721363 16 7355 XP_005256258 16 7355 XP_005256257 16 7355 XP_005256256 16 7355 XP_005256255 16 7355 XP_006721362 16 7355 XP_006721361 16 7355 XP_005256254 16 7355 XP_005256253 16 7355 XP_005256252 16 7355 XP_005256251 16 7355 XP_006721360 16 7355 XP_005256250 16 7355 NP_037363 15 9605 NP_938205 15 9605 NP_037413 15 9605 XP_005260739 15 9605 XP_006720158 15 9605 XP_005267547 15 9605 XP_005267546 15 9605>NP_000360 Length = 764 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SLLEVSQTS 9 SLL+VSQTS Sbjct: 229 SLLDVSQTS 237>XP_005268094 Length = 764 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SLLEVSQTS 9 SLL+VSQTS Sbjct: 229 SLLDVSQTS 237>NP_115582 Length = 1866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_006721363 Length = 1385 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_005256258 Length = 1397 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1136 SLLQLSQT 1143>XP_005256257 Length = 1405 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_005256256 Length = 1427 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_005256255 Length = 1809 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_006721362 Length = 1810 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_006721361 Length = 1836 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1136 SLLQLSQT 1143>XP_005256254 Length = 1837 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_005256253 Length = 1838 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1138 SLLQLSQT 1145>XP_005256252 Length = 1865 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_005256251 Length = 1866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_006721360 Length = 1866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>XP_005256250 Length = 1866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SLLEVSQT 8 SLL++SQT Sbjct: 1166 SLLQLSQT 1173>NP_037363 Length = 660 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLEVSQTS 9 S+LE+++TS Sbjct: 598 SILEMTETS 606>NP_938205 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLLEVSQTS 9 S+LE+ +TS Sbjct: 585 SILEIRETS 593>NP_037413 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLLEVSQTS 9 S+LE+ +TS Sbjct: 585 SILEIRETS 593>XP_005260739 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLLEVSQTS 9 S+LE+ +TS Sbjct: 585 SILEIRETS 593>XP_006720158 Length = 660 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLEVSQTS 9 S+LE+++TS Sbjct: 598 SILEMTETS 606>XP_005267547 Length = 660 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLEVSQTS 9 S+LE+++TS Sbjct: 598 SILEMTETS 606>XP_005267546 Length = 660 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLEVSQTS 9 S+LE+++TS Sbjct: 598 SILEMTETS 606Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.289 0.104 0.216 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 286,676 Number of extensions: 322 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |