Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 20 509 NP_001265871 17 4312 NP_006744 17 4312 NP_001157101 16 5631 NP_079339 16 5631 NP_065988 16 7355 XP_005267986 16 7355 NP_001035706 15 9605 NP_001159405 15 9605 NP_003826 15 9605 NP_060547 15 9605 NP_001075424 15 9605 NP_064502 15 9605 NP_064608 15 9605 NP_775834 15 9605 XP_005255000 15 9605 XP_005254998 15 9605 XP_006716105 15 9605 XP_005249871 15 9605 XP_006715090 15 9605 XP_006715089 15 9605 XP_006715088 15 9605 XP_005249008 15 9605 NP_001159607 15 9605>NP_055365 Length = 1032 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLIAKDQYR 9 SLI KDQYR Sbjct: 412 SLIEKDQYR 420>NP_001265871 Length = 197 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLIAKDQY 8 SL+AKD Y Sbjct: 3 SLLAKDAY 10>NP_006744 Length = 361 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLIAKDQY 8 SL+AKD Y Sbjct: 3 SLLAKDAY 10>NP_001157101 Length = 861 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLIAKDQYR 9 SL++KD Y+ Sbjct: 112 SLVSKDLYK 120>NP_079339 Length = 573 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLIAKDQYR 9 SL++KD Y+ Sbjct: 112 SLVSKDLYK 120>NP_065988 Length = 2048 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LIAKDQYR 9 ++A+DQ+R Sbjct: 335 ILARDQFR 342>XP_005267986 Length = 2022 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LIAKDQYR 9 ++A+DQ+R Sbjct: 309 ILARDQFR 316>NP_001035706 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AKDQYR 9 AK+QYR Sbjct: 112 AKEQYR 117>NP_001159405 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AKDQYR 9 AK+QYR Sbjct: 162 AKEQYR 167>NP_003826 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AKDQYR 9 AK+QYR Sbjct: 162 AKEQYR 167>NP_060547 Length = 759 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 IAKDQYR 9 +AKD+Y+ Sbjct: 190 VAKDKYK 196>NP_001075424 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AKDQYR 9 AK+QYR Sbjct: 162 AKEQYR 167>NP_064502 Length = 1176 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AKDQYR 9 AKD+YR Sbjct: 831 AKDKYR 836>NP_064608 Length = 584 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LIAKDQYR 9 L+AK++Y+ Sbjct: 513 LLAKEEYK 520>NP_775834 Length = 508 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SLIAKDQ 7 SLIAKD+ Sbjct: 494 SLIAKDK 500>XP_005255000 Length = 721 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AKDQYR 9 AK+QYR Sbjct: 112 AKEQYR 117>XP_005254998 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AKDQYR 9 AK+QYR Sbjct: 112 AKEQYR 117>XP_006716105 Length = 734 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 IAKDQYR 9 +AKD+Y+ Sbjct: 190 VAKDKYK 196>XP_005249871 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LIAKDQYR 9 L+AK++Y+ Sbjct: 181 LLAKEEYK 188>XP_006715090 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SLIAKDQ 7 SLIAKD+ Sbjct: 338 SLIAKDK 344>XP_006715089 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SLIAKDQ 7 SLIAKD+ Sbjct: 431 SLIAKDK 437>XP_006715088 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SLIAKDQ 7 SLIAKD+ Sbjct: 431 SLIAKDK 437>XP_005249008 Length = 499 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SLIAKDQ 7 SLIAKD+ Sbjct: 485 SLIAKDK 491>NP_001159607 Length = 618 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 IAKDQYR 9 +AKD+Y+ Sbjct: 49 VAKDKYK 55Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.133 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 481,715 Number of extensions: 606 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |