Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_116023 17 3301 XP_005251676 17 3301 NP_036566 17 4312 XP_005248768 17 4312 XP_006715522 17 4312 XP_005248767 17 4312 NP_002589 16 5631 NP_001186390 16 5631 NP_659005 16 5631 XP_006715561 16 5631 NP_001070 16 7355 NP_997402 16 7355 NP_005070 16 7355 NP_001274071 16 7355 NP_001020423 16 7355 NP_001020424 16 7355 NP_001274072 16 7355 NP_001274069 16 7355 NP_079524 16 7355 XP_006725425 16 7355 XP_006725424 16 7355 XP_006725423 16 7355 XP_006725422 16 7355 XP_006725421 16 7355 XP_006725420 16 7355 XP_006725419 16 7355 XP_005257794 16 7355 XP_006722186 16 7355 XP_006722185 16 7355 XP_006722184 16 7355 XP_006722183 16 7355 XP_006722182 16 7355 XP_006722181 16 7355 XP_006722180 16 7355 XP_006712792 16 7355 XP_005264072 16 7355 NP_115752 16 7355 NP_057594 15 9605>NP_116023 Length = 1089 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LASKVGGR 9 LAS VGGR Sbjct: 657 LASMVGGR 664>XP_005251676 Length = 1089 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LASKVGGR 9 LAS VGGR Sbjct: 657 LASMVGGR 664>NP_036566 Length = 495 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LASKVGGR 9 +ASK+GG+ Sbjct: 129 VASKIGGK 136>XP_005248768 Length = 429 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LASKVGGR 9 +ASK+GG+ Sbjct: 63 VASKIGGK 70>XP_006715522 Length = 442 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LASKVGGR 9 +ASK+GG+ Sbjct: 129 VASKIGGK 136>XP_005248767 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LASKVGGR 9 +ASK+GG+ Sbjct: 112 VASKIGGK 119>NP_002589 Length = 344 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKVGGR 9 SKVGGR Sbjct: 29 SKVGGR 34>NP_001186390 Length = 221 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKVGGR 9 SKVGGR Sbjct: 29 SKVGGR 34>NP_659005 Length = 228 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKVGGR 9 SKVGGR Sbjct: 29 SKVGGR 34>XP_006715561 Length = 298 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKVGGR 9 SKVGGR Sbjct: 29 SKVGGR 34>NP_001070 Length = 619 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 SLASKV G Sbjct: 599 SLASKVEG 606>NP_997402 Length = 312 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 SLASKV G Sbjct: 292 SLASKVEG 299>NP_005070 Length = 184 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 +L SKVGG Sbjct: 143 NLKSKVGG 150>NP_001274071 Length = 238 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 +L SKVGG Sbjct: 197 NLKSKVGG 204>NP_001020423 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 +L SKVGG Sbjct: 183 NLKSKVGG 190>NP_001020424 Length = 207 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 +L SKVGG Sbjct: 166 NLKSKVGG 173>NP_001274072 Length = 233 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 +L SKVGG Sbjct: 192 NLKSKVGG 199>NP_001274069 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 +L SKVGG Sbjct: 206 NLKSKVGG 213>NP_079524 Length = 1183 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 380 LASKAGG 386>XP_006725425 Length = 1035 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 234 LASKAGG 240>XP_006725424 Length = 1078 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 234 LASKAGG 240>XP_006725423 Length = 1078 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 234 LASKAGG 240>XP_006725422 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 331 LASKAGG 337>XP_006725421 Length = 1132 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 331 LASKAGG 337>XP_006725420 Length = 1134 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 290 LASKAGG 296>XP_006725419 Length = 1175 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 331 LASKAGG 337>XP_005257794 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LASKVGGR 9 +ASK+G R Sbjct: 1 MASKIGSR 8>XP_006722186 Length = 1035 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 234 LASKAGG 240>XP_006722185 Length = 1078 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 234 LASKAGG 240>XP_006722184 Length = 1078 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 234 LASKAGG 240>XP_006722183 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 331 LASKAGG 337>XP_006722182 Length = 1132 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 331 LASKAGG 337>XP_006722181 Length = 1134 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 290 LASKAGG 296>XP_006722180 Length = 1175 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LASKVGG 8 LASK GG Sbjct: 331 LASKAGG 337>XP_006712792 Length = 312 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 SLASKV G Sbjct: 292 SLASKVEG 299>XP_005264072 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLASKVGG 8 SLASKV G Sbjct: 593 SLASKVEG 600>NP_115752 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LASKVGGR 9 +ASK+G R Sbjct: 1 MASKIGSR 8>NP_057594 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SLASKVGGR 9 SLA +GG+ Sbjct: 89 SLAKMIGGK 97Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.126 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 419,156 Number of extensions: 583 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |