Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1135 NP_055590 17 4312 NP_001007468 17 4312 NP_001245256 17 4312 NP_001245255 17 4312 NP_001245254 17 4312 XP_005261931 17 4312 XP_006724453 17 4312 XP_005261930 17 4312 XP_006724452 17 4312 XP_005261929 17 4312 XP_005261928 17 4312 XP_005261927 17 4312 XP_006724451 17 4312 XP_005261926 17 4312 XP_005261925 17 4312 NP_001018864 16 7355 XP_005247970 16 7355 XP_005247969 16 7355 XP_005247968 16 7355 XP_006710833 16 7355 XP_006710832 16 7355 NP_061174 16 7355>NP_004295 Length = 1620 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKMALQRSF 9 SKMALQ SF Sbjct: 433 SKMALQSSF 441>NP_055590 Length = 1211 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 349 KMALRRAF 356>NP_001007468 Length = 1242 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 349 KMALRRAF 356>NP_001245256 Length = 1148 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 267 KMALRRAF 274>NP_001245255 Length = 1160 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 267 KMALRRAF 274>NP_001245254 Length = 1187 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 325 KMALRRAF 332>XP_005261931 Length = 871 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 349 KMALRRAF 356>XP_006724453 Length = 1160 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 267 KMALRRAF 274>XP_005261930 Length = 1189 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 267 KMALRRAF 274>XP_006724452 Length = 1189 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 267 KMALRRAF 274>XP_005261929 Length = 1240 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 349 KMALRRAF 356>XP_005261928 Length = 1247 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 325 KMALRRAF 332>XP_005261927 Length = 1247 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 325 KMALRRAF 332>XP_006724451 Length = 1271 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 349 KMALRRAF 356>XP_005261926 Length = 1271 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 349 KMALRRAF 356>XP_005261925 Length = 1271 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KMALQRSF 9 KMAL+R+F Sbjct: 349 KMALRRAF 356>NP_001018864 Length = 598 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MALQRSF 9 +ALQRSF Sbjct: 322 IALQRSF 328>XP_005247970 Length = 378 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MALQRSF 9 +ALQRSF Sbjct: 322 IALQRSF 328>XP_005247969 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MALQRSF 9 +ALQRSF Sbjct: 138 IALQRSF 144>XP_005247968 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MALQRSF 9 +ALQRSF Sbjct: 322 IALQRSF 328>XP_006710833 Length = 628 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MALQRSF 9 MALQR F Sbjct: 55 MALQRDF 61>XP_006710832 Length = 628 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MALQRSF 9 MALQR F Sbjct: 55 MALQRDF 61>NP_061174 Length = 639 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MALQRSF 9 MALQR F Sbjct: 55 MALQRDF 61Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.123 0.300 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 294,292 Number of extensions: 309 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |