Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001276866 18 1935 NP_004439 18 1935 NP_001276865 18 1935 NP_001005862 18 1935 XP_005257197 18 1935 XP_006721828 18 1935 NP_666018 17 3301 NP_001296 15 9605 NP_006725 15 9605 NP_001003760 15 9605 XP_005267014 15 9605 XP_005249164 15 9605>NP_001276866 Length = 1055 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SIISAAVGI 9 SIISA VGI Sbjct: 653 SIISAVVGI 661>NP_004439 Length = 1255 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SIISAAVGI 9 SIISA VGI Sbjct: 653 SIISAVVGI 661>NP_001276865 Length = 1240 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SIISAAVGI 9 SIISA VGI Sbjct: 638 SIISAVVGI 646>NP_001005862 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SIISAAVGI 9 SIISA VGI Sbjct: 623 SIISAVVGI 631>XP_005257197 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SIISAAVGI 9 SIISA VGI Sbjct: 623 SIISAVVGI 631>XP_006721828 Length = 1336 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SIISAAVGI 9 SIISA VGI Sbjct: 734 SIISAVVGI 742>NP_666018 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IISAAVGI 9 +ISAA+GI Sbjct: 23 VISAAIGI 30>NP_001296 Length = 209 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SIISAAVGI 9 SII AA+G+ Sbjct: 87 SIIVAALGV 95>NP_006725 Length = 2446 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SIISAAVGI 9 SI+S VGI Sbjct: 715 SIVSTPVGI 723>NP_001003760 Length = 634 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SIISAAV 7 SIISAAV Sbjct: 142 SIISAAV 148>XP_005267014 Length = 2446 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SIISAAVGI 9 SI+S VGI Sbjct: 715 SIVSTPVGI 723>XP_005249164 Length = 634 Score = 15.4 bits (28), Expect = 9605 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SIISAAV 7 SIISAAV Sbjct: 142 SIISAAV 148Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.134 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 254,950 Number of extensions: 187 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |