Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001073936 19 869 NP_001013433 18 1135 NP_060785 18 1135 NP_361014 18 1135 NP_000250 17 2528 NP_001135967 17 2528 XP_005254459 17 2528 XP_005254458 17 2528 XP_005254457 17 2528 XP_005254456 17 2528 XP_005254455 17 2528 XP_005254454 17 2528 NP_775871 17 4312 NP_055543 16 5631 NP_653225 16 5631 NP_787062 16 5631 NP_001171692 16 5631 NP_005086 16 5631 NP_001036083 16 5631 NP_005475 16 5631 XP_006724587 16 5631 XP_005274689 16 5631 XP_005267304 16 5631 XP_005271388 16 5631 XP_006711098 16 5631 XP_006711097 16 5631 XP_005271387 16 5631 XP_005271385 16 5631 NP_060386 16 7355 NP_000696 16 7355 XP_006723317 16 7355 NP_115642 15 9605 NP_002684 15 9605 NP_001119603 15 9605 NP_848622 15 9605 NP_065831 15 9605 NP_001406 15 9605 NP_001307 15 9605>NP_001073936 Length = 1848 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SGMELKYNI 9 +GM+L+YNI Sbjct: 1708 TGMQLRYNI 1716>NP_001013433 Length = 589 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGMELKYNI 9 SGMELK NI Sbjct: 467 SGMELKDNI 475>NP_060785 Length = 627 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGMELKYNI 9 SGMELK NI Sbjct: 505 SGMELKDNI 513>NP_361014 Length = 707 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGMELKYNI 9 SGMELK NI Sbjct: 585 SGMELKDNI 593>NP_000250 Length = 1855 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1716 GMQIRYNV 1723>NP_001135967 Length = 1828 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1689 GMQIRYNV 1696>XP_005254459 Length = 1825 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1686 GMQIRYNV 1693>XP_005254458 Length = 1852 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1713 GMQIRYNV 1720>XP_005254457 Length = 1853 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1714 GMQIRYNV 1721>XP_005254456 Length = 1877 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1738 GMQIRYNV 1745>XP_005254455 Length = 1880 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1741 GMQIRYNV 1748>XP_005254454 Length = 1880 Score = 17.3 bits (33), Expect = 2528 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 GMELKYNI 9 GM+++YN+ Sbjct: 1741 GMQIRYNV 1748>NP_775871 Length = 8384 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SGMELKYNI 9 SG+ KYN+ Sbjct: 1079 SGLVFKYNV 1087>NP_055543 Length = 1322 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GMELKYNI 9 G ELKY+I Sbjct: 322 GPELKYDI 329>NP_653225 Length = 344 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SGMELKYNI 9 SGM+LK+ + Sbjct: 237 SGMKLKHTV 245>NP_787062 Length = 419 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SGMELKYNI 9 SGM+LK+ + Sbjct: 237 SGMKLKHTV 245>NP_001171692 Length = 345 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SGMELKYNI 9 SGM+LK+ + Sbjct: 163 SGMKLKHTV 171>NP_005086 Length = 1548 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGMELKY 7 SGM LKY Sbjct: 1201 SGMTLKY 1207>NP_001036083 Length = 570 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MELKYN 8 ME+KYN Sbjct: 243 MEMKYN 248>NP_005475 Length = 583 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MELKYN 8 ME+KYN Sbjct: 256 MEMKYN 261>XP_006724587 Length = 1732 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GMELKYNI 9 G ELKY+I Sbjct: 322 GPELKYDI 329>XP_005274689 Length = 1762 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GMELKYNI 9 G ELKY+I Sbjct: 322 GPELKYDI 329>XP_005267304 Length = 500 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MELKYN 8 ME+KYN Sbjct: 256 MEMKYN 261>XP_005271388 Length = 1224 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGMELKY 7 SGM LKY Sbjct: 877 SGMTLKY 883>XP_006711098 Length = 1516 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGMELKY 7 SGM LKY Sbjct: 1169 SGMTLKY 1175>XP_006711097 Length = 1542 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGMELKY 7 SGM LKY Sbjct: 1195 SGMTLKY 1201>XP_005271387 Length = 1545 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGMELKY 7 SGM LKY Sbjct: 1198 SGMTLKY 1204>XP_005271385 Length = 1551 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGMELKY 7 SGM LKY Sbjct: 1204 SGMTLKY 1210>NP_060386 Length = 290 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GMELKYNI 9 G+E KYN+ Sbjct: 149 GLEDKYNL 156>NP_000696 Length = 291 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 GMELKYNI 9 G+E+ YN+ Sbjct: 93 GLEIVYNV 100>XP_006723317 Length = 163 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GMELKYNI 9 G+E KYN+ Sbjct: 22 GLEDKYNL 29>NP_115642 Length = 1984 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGMELKYNI 9 SG+ LKY I Sbjct: 1112 SGLVLKYPI 1120>NP_002684 Length = 1239 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SGMELKYNI 9 +GME +Y I Sbjct: 1204 TGMERRYGI 1212>NP_001119603 Length = 1239 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SGMELKYNI 9 +GME +Y I Sbjct: 1204 TGMERRYGI 1212>NP_848622 Length = 1124 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GMELKYNI 9 G+EL Y+I Sbjct: 218 GIELSYDI 225>NP_065831 Length = 1392 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 MELKYNI 9 ++LKYN+ Sbjct: 770 LDLKYNL 776>NP_001406 Length = 472 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ELKYNI 9 +LKYNI Sbjct: 227 QLKYNI 232>NP_001307 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SGMELKYNI 9 +G E+KY++ Sbjct: 304 TGQEVKYDL 312Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.134 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 539,482 Number of extensions: 935 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |