Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006199 17 2528 NP_001264992 17 3301 XP_006722588 17 3301 NP_001172029 17 4312 NP_525021 17 4312 XP_006723772 17 4312 NP_542790 17 4312 NP_690850 17 4312 NP_002435 16 5631 XP_005262326 16 5631 XP_006719395 16 5631 NP_872398 16 5631 NP_054752 16 5631 NP_001004757 16 7355 NP_005679 16 7355 XP_005247116 16 7355 XP_005247115 16 7355 NP_039227 16 7355 NP_039228 16 7355 NP_001004466 16 7355 NP_001004465 16 7355 NP_039226 16 7355 NP_001899 15 9605 NP_680091 15 9605 NP_680093 15 9605 NP_680090 15 9605 NP_680092 15 9605 NP_001185734 15 9605 NP_001185735 15 9605 NP_002285 15 9605 NP_054701 15 9605 NP_001116078 15 9605 NP_542386 15 9605 NP_036533 15 9605 XP_005261968 15 9605 XP_005261966 15 9605 XP_005261967 15 9605 XP_006724476 15 9605 XP_005261965 15 9605 XP_006716308 15 9605 XP_006716307 15 9605 NP_061720 15 9605>NP_006199 Length = 925 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SFSVKNKER 9 SFS+K+KE+ Sbjct: 287 SFSLKSKEK 295>NP_001264992 Length = 1015 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SFSVKNKE 8 SFS KNKE Sbjct: 890 SFSDKNKE 897>XP_006722588 Length = 1015 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SFSVKNKE 8 SFS KNKE Sbjct: 890 SFSDKNKE 897>NP_001172029 Length = 751 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SFSVKNKER 9 SF V+NK+R Sbjct: 729 SFFVRNKKR 737>NP_525021 Length = 1543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVKNKER 9 +VKNKER Sbjct: 1385 TVKNKER 1391>XP_006723772 Length = 690 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SFSVKNKER 9 +F V+NKER Sbjct: 230 AFLVENKER 238>NP_542790 Length = 696 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SFSVKNKER 9 +F V+NKER Sbjct: 236 AFLVENKER 244>NP_690850 Length = 1714 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FSVKNKER 9 FS++NK R Sbjct: 123 FSIRNKNR 130>NP_002435 Length = 577 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FS+KNK+ Sbjct: 206 FSIKNKK 212>XP_005262326 Length = 578 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FS+KNK+ Sbjct: 207 FSIKNKK 213>XP_006719395 Length = 244 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVKNKER 9 SVKN+ER Sbjct: 149 SVKNQER 155>NP_872398 Length = 280 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SVKNKER 9 S+KNK+R Sbjct: 18 SIKNKQR 24>NP_054752 Length = 244 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVKNKER 9 SVKN+ER Sbjct: 149 SVKNQER 155>NP_001004757 Length = 317 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 +SVKNK+ Sbjct: 294 YSVKNKQ 300>NP_005679 Length = 1437 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SFSVKNKER 9 SF++K KE+ Sbjct: 1214 SFTIKPKEK 1222>XP_005247116 Length = 1437 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SFSVKNKER 9 SF++K KE+ Sbjct: 1214 SFTIKPKEK 1222>XP_005247115 Length = 1437 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SFSVKNKER 9 SF++K KE+ Sbjct: 1214 SFTIKPKEK 1222>NP_039227 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FS++NKE Sbjct: 291 FSLRNKE 297>NP_039228 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FS++NKE Sbjct: 291 FSLRNKE 297>NP_001004466 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FS++NKE Sbjct: 291 FSLRNKE 297>NP_001004465 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FS++NKE Sbjct: 292 FSLRNKE 298>NP_039226 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FS++NKE Sbjct: 292 FSLRNKE 298>NP_001899 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SFSVKNKER 9 S+SV N E+ Sbjct: 229 SYSVSNSEK 237>NP_680091 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SFSVKNKER 9 S+SV N E+ Sbjct: 229 SYSVSNSEK 237>NP_680093 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SFSVKNKER 9 S+SV N E+ Sbjct: 229 SYSVSNSEK 237>NP_680090 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SFSVKNKER 9 S+SV N E+ Sbjct: 229 SYSVSNSEK 237>NP_680092 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SFSVKNKER 9 S+SV N E+ Sbjct: 229 SYSVSNSEK 237>NP_001185734 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SFSVKNKE 8 SF+V N+E Sbjct: 141 SFAVSNRE 148>NP_001185735 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SFSVKNKE 8 SF+V N+E Sbjct: 141 SFAVSNRE 148>NP_002285 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FSVKNKER 9 F+VKN+ R Sbjct: 286 FAVKNENR 293>NP_054701 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FSVKNKER 9 F+VKN+ R Sbjct: 286 FAVKNENR 293>NP_001116078 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FSVKNKER 9 F+VKN+ R Sbjct: 286 FAVKNENR 293>NP_542386 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SFSVKNKE 8 SF+V N+E Sbjct: 141 SFAVSNRE 148>NP_036533 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVKNKER 9 SVK KER Sbjct: 1607 SVKEKER 1613>XP_005261968 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVKNKER 9 SVK KER Sbjct: 1607 SVKEKER 1613>XP_005261966 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVKNKER 9 SVK KER Sbjct: 1607 SVKEKER 1613>XP_005261967 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVKNKER 9 SVK KER Sbjct: 1607 SVKEKER 1613>XP_006724476 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVKNKER 9 SVK KER Sbjct: 1607 SVKEKER 1613>XP_005261965 Length = 1920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVKNKER 9 SVK KER Sbjct: 1689 SVKEKER 1695>XP_006716308 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SFSVKNKER 9 S+SV N E+ Sbjct: 229 SYSVSNSEK 237>XP_006716307 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SFSVKNKER 9 S+SV N E+ Sbjct: 229 SYSVSNSEK 237>NP_061720 Length = 4024 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FSVKNKE 8 FSVKN++ Sbjct: 75 FSVKNEQ 81Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.117 0.285 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 555,093 Number of extensions: 927 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |