Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 18 1935 NP_001087241 18 1935 XP_006714101 18 1935 XP_005265799 18 1935 XP_005265798 18 1935 XP_005265797 18 1935 NP_001138619 17 4312 NP_001138618 17 4312 NP_001138620 17 4312 NP_004373 17 4312 NP_065816 16 5631 NP_056083 16 5631 NP_005002 16 5631 NP_060453 16 5631 XP_005257554 16 5631 XP_005247302 16 5631 XP_006710573 16 5631 XP_006710572 16 5631 XP_006710571 16 5631 XP_006710570 16 5631 XP_006710569 16 5631 XP_006710568 16 5631 XP_006710567 16 5631 XP_006710566 16 5631 XP_005245859 16 5631 NP_001035199 16 5631 NP_001138760 16 7355 NP_647480 16 7355 NP_001166282 15 9605 NP_001166284 15 9605 NP_002070 15 9605 NP_001166286 15 9605 NP_001166285 15 9605 NP_776250 15 9605 NP_116103 15 9605 NP_071934 15 9605 NP_001026884 15 9605 NP_112598 15 9605 XP_005268062 15 9605 XP_005268061 15 9605>NP_000213 Length = 976 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 SARVN SGV Sbjct: 279 SARVNDSGV 287>NP_001087241 Length = 972 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 SARVN SGV Sbjct: 279 SARVNDSGV 287>XP_006714101 Length = 526 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 SARVN SGV Sbjct: 280 SARVNDSGV 288>XP_005265799 Length = 973 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 SARVN SGV Sbjct: 280 SARVNDSGV 288>XP_005265798 Length = 976 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 SARVN SGV Sbjct: 280 SARVNDSGV 288>XP_005265797 Length = 977 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 SARVN SGV Sbjct: 280 SARVNDSGV 288>NP_001138619 Length = 375 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SARVNYS 7 +ARVNYS Sbjct: 54 AARVNYS 60>NP_001138618 Length = 444 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SARVNYS 7 +ARVNYS Sbjct: 94 AARVNYS 100>NP_001138620 Length = 401 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SARVNYS 7 +ARVNYS Sbjct: 94 AARVNYS 100>NP_004373 Length = 415 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SARVNYS 7 +ARVNYS Sbjct: 94 AARVNYS 100>NP_065816 Length = 5183 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>NP_056083 Length = 2243 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 +A ++YSGV Sbjct: 378 NANISYSGV 386>NP_005002 Length = 503 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ARVNYSGV 9 A+VNYS V Sbjct: 344 AQVNYSAV 351>NP_060453 Length = 446 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SARVNYSG 8 +AR+N+SG Sbjct: 306 TARLNFSG 313>XP_005257554 Length = 364 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SARVNYSG 8 +AR+N+SG Sbjct: 224 TARLNFSG 231>XP_005247302 Length = 2248 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 +A ++YSGV Sbjct: 378 NANISYSGV 386>XP_006710573 Length = 5177 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_006710572 Length = 5188 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_006710571 Length = 5194 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_006710570 Length = 5195 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_006710569 Length = 5212 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_006710568 Length = 5221 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_006710567 Length = 5222 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_006710566 Length = 5222 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>XP_005245859 Length = 5223 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SARVNYSG 8 + R+NYSG Sbjct: 1872 NVRMNYSG 1879>NP_001035199 Length = 503 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ARVNYSGV 9 A+VNYS V Sbjct: 344 AQVNYSAV 351>NP_001138760 Length = 539 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 +A V+YSGV Sbjct: 437 AALVHYSGV 445>NP_647480 Length = 589 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 +A V+YSGV Sbjct: 487 AALVHYSGV 495>NP_001166282 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 +NYSGV Sbjct: 233 LNYSGV 238>NP_001166284 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 +NYSGV Sbjct: 233 LNYSGV 238>NP_002070 Length = 413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SARVNYSGV 9 S R+N SG+ Sbjct: 385 SGRINVSGL 393>NP_001166286 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 +NYSGV Sbjct: 233 LNYSGV 238>NP_001166285 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 +NYSGV Sbjct: 233 LNYSGV 238>NP_776250 Length = 369 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 +NYSGV Sbjct: 282 LNYSGV 287>NP_116103 Length = 234 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 VNYSG+ Sbjct: 48 VNYSGL 53>NP_071934 Length = 1249 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 VNYSG+ Sbjct: 48 VNYSGL 53>NP_001026884 Length = 1240 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 VNYSG+ Sbjct: 48 VNYSGL 53>NP_112598 Length = 5088 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SARVNYSGV 9 +ARV +SG+ Sbjct: 555 TARVTFSGL 563>XP_005268062 Length = 1272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 VNYSG+ Sbjct: 80 VNYSGL 85>XP_005268061 Length = 1281 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNYSGV 9 VNYSG+ Sbjct: 80 VNYSGL 85Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.122 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 461,071 Number of extensions: 563 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |