Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 19 665 NP_653223 17 3301 NP_001091846 17 4312 NP_001010890 17 4312 NP_001009611 17 4312 XP_005276179 17 4312 XP_006711143 17 4312 NP_001121190 16 7355 NP_001121189 16 7355 NP_006735 15 9605 NP_060050 15 9605 NP_115677 15 9605 NP_006276 15 9605 XP_005270080 15 9605 XP_005269983 15 9605 XP_005269982 15 9605 XP_006717970 15 9605>NP_115927 Length = 1321 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRLLNRVR 9 R RLLNRVR Sbjct: 698 RARLLNRVR 706>NP_653223 Length = 773 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VRLLNRVR 9 ++LLNRVR Sbjct: 271 IQLLNRVR 278>NP_001091846 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RVRLLNRVR 9 R L+NRVR Sbjct: 437 RAELMNRVR 445>NP_001010890 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RVRLLNRVR 9 R L+NRVR Sbjct: 437 RAELMNRVR 445>NP_001009611 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RVRLLNRVR 9 R L+NRVR Sbjct: 437 RAELMNRVR 445>XP_005276179 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RVRLLNRVR 9 R L+NRVR Sbjct: 437 RAELMNRVR 445>XP_006711143 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RVRLLNRVR 9 R L+NRVR Sbjct: 437 RAELMNRVR 445>NP_001121190 Length = 1668 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRLLNRVR 9 V +LNR+R Sbjct: 335 VHMLNRIR 342>NP_001121189 Length = 3277 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRLLNRVR 9 V +LNR+R Sbjct: 1944 VHMLNRIR 1951>NP_006735 Length = 201 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RVRLLN 6 RVRLLN Sbjct: 78 RVRLLN 83>NP_060050 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VRLLNR 7 VRLLNR Sbjct: 300 VRLLNR 305>NP_115677 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RVRLLNRVR 9 R+R L RVR Sbjct: 121 RLRALRRVR 129>NP_006276 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VRLLNRVR 9 V+L+NR+R Sbjct: 101 VQLMNRLR 108>XP_005270080 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RVRLLN 6 RVRLLN Sbjct: 142 RVRLLN 147>XP_005269983 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VRLLNR 7 VRLLNR Sbjct: 300 VRLLNR 305>XP_005269982 Length = 734 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VRLLNR 7 VRLLNR Sbjct: 326 VRLLNR 331>XP_006717970 Length = 734 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VRLLNR 7 VRLLNR Sbjct: 326 VRLLNR 331Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.350 0.157 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 343,086 Number of extensions: 533 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |