Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_852111 21 229 NP_000136 21 229 NP_000360 21 229 XP_005268094 21 229 NP_000224 20 509 XP_005264366 20 509 XP_006712078 20 509 XP_005276683 18 1482 XP_005275884 18 1482 NP_073746 17 3301 XP_006723397 17 3301 XP_005259220 17 3301 XP_006723396 17 3301 XP_006723395 17 3301 XP_006723394 17 3301 XP_006723393 17 3301 XP_006723392 17 3301 NP_065133 17 4312 NP_001136433 17 4312 NP_002805 16 5631 NP_736606 16 5631 NP_001258349 16 7355 NP_060245 16 7355 XP_006712935 16 7355 XP_006712934 16 7355 XP_006712933 16 7355 NP_852118 16 7355 NP_703146 16 7355 NP_006233 16 7355 NP_079501 15 9605 NP_919299 15 9605 NP_919310 15 9605 NP_919311 15 9605 NP_919309 15 9605 NP_919313 15 9605 NP_073618 15 9605 NP_001159687 15 9605 NP_001005188 15 9605 NP_055716 15 9605 NP_061141 15 9605 NP_078815 15 9605 NP_110387 15 9605 XP_005259994 15 9605 XP_005255020 15 9605 XP_005251505 15 9605 XP_005251504 15 9605 XP_006716784 15 9605 XP_005251425 15 9605 XP_005251424 15 9605 XP_005251423 15 9605 XP_005251422 15 9605 XP_005251421 15 9605 XP_005265902 15 9605 XP_005265901 15 9605 XP_005265899 15 9605 XP_005265900 15 9605 XP_006714895 15 9605 XP_006714894 15 9605 XP_005265898 15 9605 XP_005265897 15 9605 NP_919445 15 9605 NP_001004730 15 9605 NP_001034764 15 9605 NP_001004483 15 9605 NP_001010887 15 9605 NP_795369 15 9605>NP_852111 Length = 669 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R LMCNLAF Sbjct: 372 RFLMCNLAF 380>NP_000136 Length = 695 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R LMCNLAF Sbjct: 398 RFLMCNLAF 406>NP_000360 Length = 764 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R LMCNLAF Sbjct: 450 RFLMCNLAF 458>XP_005268094 Length = 764 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R LMCNLAF Sbjct: 450 RFLMCNLAF 458>NP_000224 Length = 699 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R LMCNL+F Sbjct: 395 RFLMCNLSF 403>XP_005264366 Length = 380 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R LMCNL+F Sbjct: 76 RFLMCNLSF 84>XP_006712078 Length = 389 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R LMCNL+F Sbjct: 85 RFLMCNLSF 93>XP_005276683 Length = 150 Score = 18.1 bits (35), Expect = 1482 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R+L+CN+ F Sbjct: 111 RILLCNIHF 119>XP_005275884 Length = 150 Score = 18.1 bits (35), Expect = 1482 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RVLMCNLAF 9 R+L+CN+ F Sbjct: 111 RILLCNIHF 119>NP_073746 Length = 1386 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 875 VLVCELAF 882>XP_006723397 Length = 1327 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 816 VLVCELAF 823>XP_005259220 Length = 1386 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 875 VLVCELAF 882>XP_006723396 Length = 1386 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 875 VLVCELAF 882>XP_006723395 Length = 1387 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 876 VLVCELAF 883>XP_006723394 Length = 1406 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 895 VLVCELAF 902>XP_006723393 Length = 1406 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 895 VLVCELAF 902>XP_006723392 Length = 1406 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 VL+C LAF Sbjct: 895 VLVCELAF 902>NP_065133 Length = 372 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLMCNLA 8 V MCNLA Sbjct: 59 VYMCNLA 65>NP_001136433 Length = 372 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLMCNLA 8 V MCNLA Sbjct: 59 VYMCNLA 65>NP_002805 Length = 226 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VLMCNLAF 9 +++CNLA+ Sbjct: 8 LMVCNLAY 15>NP_736606 Length = 151 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VLMCNLAF 9 +++CNLA+ Sbjct: 8 LMVCNLAY 15>NP_001258349 Length = 273 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LMCNLAF 9 LM NLAF Sbjct: 34 LMANLAF 40>NP_060245 Length = 380 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LMCNLAF 9 LM NLAF Sbjct: 141 LMANLAF 147>XP_006712935 Length = 977 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 CNLAF 9 CNLAF Sbjct: 801 CNLAF 805>XP_006712934 Length = 1583 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 CNLAF 9 CNLAF Sbjct: 697 CNLAF 701>XP_006712933 Length = 1687 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 CNLAF 9 CNLAF Sbjct: 801 CNLAF 805>NP_852118 Length = 1684 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 CNLAF 9 CNLAF Sbjct: 798 CNLAF 802>NP_703146 Length = 311 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 + +C+LAF Sbjct: 61 IFLCHLAF 68>NP_006233 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 V +CN+AF Sbjct: 193 VRVCNVAF 200>NP_079501 Length = 481 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RVLMCNL 7 RVLMC L Sbjct: 396 RVLMCLL 402>NP_919299 Length = 498 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VLMCNLAF 9 +L C+LAF Sbjct: 18 LLTCSLAF 25>NP_919310 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 427 RVLPCNHEF 435>NP_919311 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>NP_919309 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>NP_919313 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>NP_073618 Length = 515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 477 RVLPCNHEF 485>NP_001159687 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VLMCNLAF 9 VL C LAF Sbjct: 194 VLFCVLAF 201>NP_001005188 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 MCNLAF 9 +CNL+F Sbjct: 61 LCNLSF 66>NP_055716 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>NP_061141 Length = 944 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 MCNLA 8 MCNLA Sbjct: 799 MCNLA 803>NP_078815 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 R+L CN F Sbjct: 265 RILTCNHIF 273>NP_110387 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VLMCNLAF 9 VL C LAF Sbjct: 194 VLFCVLAF 201>XP_005259994 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VLMCNLAF 9 VL C LAF Sbjct: 296 VLFCVLAF 303>XP_005255020 Length = 799 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 MCNLA 8 MCNLA Sbjct: 654 MCNLA 658>XP_005251505 Length = 226 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLMCNLA 8 VLMC LA Sbjct: 51 VLMCALA 57>XP_005251504 Length = 229 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLMCNLA 8 VLMC LA Sbjct: 100 VLMCALA 106>XP_006716784 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>XP_005251425 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>XP_005251424 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>XP_005251423 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>XP_005251422 Length = 481 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 443 RVLPCNHEF 451>XP_005251421 Length = 619 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 581 RVLPCNHEF 589>XP_005265902 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 313 RVLPCNHEF 321>XP_005265901 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 313 RVLPCNHEF 321>XP_005265899 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 313 RVLPCNHEF 321>XP_005265900 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 313 RVLPCNHEF 321>XP_006714895 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 347 RVLPCNHEF 355>XP_006714894 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 391 RVLPCNHEF 399>XP_005265898 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>XP_005265897 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 RVL CN F Sbjct: 394 RVLPCNHEF 402>NP_919445 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 RVLMCNLAF 9 R+L CN F Sbjct: 291 RILTCNHIF 299>NP_001004730 Length = 310 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 MCNLAF 9 +CNL+F Sbjct: 63 LCNLSF 68>NP_001034764 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 MCNLA 8 MCNLA Sbjct: 784 MCNLA 788>NP_001004483 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 MCNLAF 9 +CNL+F Sbjct: 63 LCNLSF 68>NP_001010887 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLMCNLA 8 VLMC LA Sbjct: 100 VLMCALA 106>NP_795369 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LMCNLA 8 L+CNLA Sbjct: 140 LICNLA 145Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.354 0.150 0.510 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 519,631 Number of extensions: 660 Number of successful extensions: 66 Number of sequences better than 10000.0: 66 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 66 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |