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Blast-Search of mutated query peptide against human proteome

BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_006725230                                                           17    4312
XP_006720283                                                           17    4312
NP_001193949                                                           16    7355
XP_006724319                                                           16    7355
XP_006724318                                                           16    7355
XP_006724317                                                           16    7355
NP_001137535                                                           15    9605
NP_065947                                                              15    9605
NP_663613                                                              15    9605

>XP_006725230
          Length = 2636

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 2   TVTRSLL 8
           TVTRSLL
Sbjct: 94  TVTRSLL 100



>XP_006720283
          Length = 2636

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 2   TVTRSLL 8
           TVTRSLL
Sbjct: 94  TVTRSLL 100



>NP_001193949
          Length = 397

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   RTVTRSL 7
           RTVTR+L
Sbjct: 173 RTVTRAL 179



>XP_006724319
          Length = 452

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   RTVTRSL 7
           RTVTR+L
Sbjct: 173 RTVTRAL 179



>XP_006724318
          Length = 456

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   RTVTRSL 7
           RTVTR+L
Sbjct: 173 RTVTRAL 179



>XP_006724317
          Length = 492

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   RTVTRSL 7
           RTVTR+L
Sbjct: 173 RTVTRAL 179



>NP_001137535
          Length = 811

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  RTVTRSLLL 9
          R +TR+LLL
Sbjct: 26 RKLTRNLLL 34



>NP_065947
          Length = 879

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  RTVTRSLLL 9
          R +TR+LLL
Sbjct: 26 RKLTRNLLL 34



>NP_663613
          Length = 811

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  RTVTRSLLL 9
          R +TR+LLL
Sbjct: 26 RKLTRNLLL 34



  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.334    0.139    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 289,089
Number of extensions: 224
Number of successful extensions: 9
Number of sequences better than 10000.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.3 bits)
S2: 28 (15.4 bits)