Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001172003 17 4312 NP_001171988 17 4312 NP_078893 17 4312 NP_006505 17 4312 XP_005252265 17 4312 XP_005252264 17 4312 XP_006717348 17 4312 XP_006717347 17 4312 XP_006717346 17 4312 XP_005265428 17 4312 NP_667338 16 7355 NP_001159608 16 7355 NP_001888 16 7355 NP_001268885 16 7355 NP_443128 16 7355 XP_006713923 16 7355 XP_006713922 16 7355 XP_006712934 16 7355 XP_006712933 16 7355 NP_852118 16 7355 NP_036252 15 9605 NP_443200 15 9605 NP_001160070 15 9605 NP_055698 15 9605 NP_001015045 15 9605 NP_001252509 15 9605 NP_001252508 15 9605 NP_001252507 15 9605 NP_001001998 15 9605 XP_005262351 15 9605 XP_006718824 15 9605 XP_005249034 15 9605 XP_005249033 15 9605 XP_005262742 15 9605 XP_005262741 15 9605 XP_006714120 15 9605 XP_005262740 15 9605 XP_005262739 15 9605 XP_005262738 15 9605 XP_005263532 15 9605 NP_002676 15 9605>NP_001172003 Length = 1259 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 896 RLLSAYSA 903>NP_001171988 Length = 1495 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 1132 RLLSAYSA 1139>NP_078893 Length = 1495 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 1132 RLLSAYSA 1139>NP_006505 Length = 1956 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSAYSAT 9 RT+S +SAT Sbjct: 99 RTISRFSAT 107>XP_005252265 Length = 1381 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 1132 RLLSAYSA 1139>XP_005252264 Length = 1478 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 1132 RLLSAYSA 1139>XP_006717348 Length = 1541 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 1132 RLLSAYSA 1139>XP_006717347 Length = 1541 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 1132 RLLSAYSA 1139>XP_006717346 Length = 1541 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RTLSAYSA 8 R LSAYSA Sbjct: 1132 RLLSAYSA 1139>XP_005265428 Length = 1959 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSAYSAT 9 RT+S +SAT Sbjct: 99 RTISRFSAT 107>NP_667338 Length = 1308 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLSAYSA 8 TLSAY+A Sbjct: 981 TLSAYTA 987>NP_001159608 Length = 1228 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLSAYSA 8 TLSAY+A Sbjct: 901 TLSAYTA 907>NP_001888 Length = 2322 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSAYS 7 RTLSA+S Sbjct: 1415 RTLSAFS 1421>NP_001268885 Length = 3631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TLSAYSAT 9 TLS Y AT Sbjct: 2670 TLSVYGAT 2677>NP_443128 Length = 3487 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TLSAYSAT 9 TLS Y AT Sbjct: 2672 TLSVYGAT 2679>XP_006713923 Length = 1228 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLSAYSA 8 TLSAY+A Sbjct: 901 TLSAYTA 907>XP_006713922 Length = 1262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLSAYSA 8 TLSAY+A Sbjct: 981 TLSAYTA 987>XP_006712934 Length = 1583 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RTLSAY 6 RTLSAY Sbjct: 1189 RTLSAY 1194>XP_006712933 Length = 1687 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RTLSAY 6 RTLSAY Sbjct: 1293 RTLSAY 1298>NP_852118 Length = 1684 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RTLSAY 6 RTLSAY Sbjct: 1290 RTLSAY 1295>NP_036252 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RTLSAYSAT 9 RTL AY T Sbjct: 275 RTLFAYEGT 283>NP_443200 Length = 366 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSAYSAT 9 LSA+SAT Sbjct: 15 LSAFSAT 21>NP_001160070 Length = 366 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSAYSAT 9 LSA+SAT Sbjct: 15 LSAFSAT 21>NP_055698 Length = 1023 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 396 TLSASSAT 403>NP_001015045 Length = 697 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 70 TLSASSAT 77>NP_001252509 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 42 TLSASSAT 49>NP_001252508 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 70 TLSASSAT 77>NP_001252507 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 56 TLSASSAT 63>NP_001001998 Length = 885 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTLSAYSAT 9 R LSA SAT Sbjct: 10 RVLSATSAT 18>XP_005262351 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LSAYSAT 9 L AYSAT Sbjct: 389 LQAYSAT 395>XP_006718824 Length = 366 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSAYSAT 9 LSA+SAT Sbjct: 15 LSAFSAT 21>XP_005249034 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RTLSAYSAT 9 RTL AY T Sbjct: 275 RTLFAYEGT 283>XP_005249033 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RTLSAYSAT 9 RTL AY T Sbjct: 271 RTLFAYEGT 279>XP_005262742 Length = 584 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 396 TLSASSAT 403>XP_005262741 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 187 TLSASSAT 194>XP_006714120 Length = 834 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 207 TLSASSAT 214>XP_005262740 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 396 TLSASSAT 403>XP_005262739 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 376 TLSASSAT 383>XP_005262738 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TLSAYSAT 9 TLSA SAT Sbjct: 382 TLSASSAT 389>XP_005263532 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTLSAYSAT 9 R LSA SAT Sbjct: 34 RVLSATSAT 42>NP_002676 Length = 860 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTLSAYSAT 9 R LSA SAT Sbjct: 10 RVLSATSAT 18Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.106 0.258 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 355,013 Number of extensions: 339 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |