Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006197 18 1482 XP_006714104 18 1482 XP_005265800 18 1482 XP_006714103 18 1482 XP_006714102 18 1482 NP_001269618 17 4312 NP_076982 17 4312 NP_001269619 17 4312 NP_001269617 17 4312 XP_005252259 17 4312 XP_006717345 17 4312 XP_005252255 17 4312 XP_005252253 17 4312 XP_005252252 17 4312 XP_005252250 17 4312 NP_001005367 15 9605 NP_001188390 15 9605 NP_065710 15 9605 NP_006648 15 9605 NP_996848 15 9605 XP_006726337 15 9605 XP_006724025 15 9605 XP_006724024 15 9605 XP_006724023 15 9605 XP_006723359 15 9605>NP_006197 Length = 1089 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSELTVAA 8 RSELTVAA Sbjct: 522 RSELTVAA 529>XP_006714104 Length = 832 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSELTVAA 8 RSELTVAA Sbjct: 547 RSELTVAA 554>XP_005265800 Length = 1089 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSELTVAA 8 RSELTVAA Sbjct: 522 RSELTVAA 529>XP_006714103 Length = 1111 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSELTVAA 8 RSELTVAA Sbjct: 544 RSELTVAA 551>XP_006714102 Length = 1114 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSELTVAA 8 RSELTVAA Sbjct: 547 RSELTVAA 554>NP_001269618 Length = 781 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 691 ELTVAAR 697>NP_076982 Length = 854 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 764 ELTVAAR 770>NP_001269619 Length = 786 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 696 ELTVAAR 702>NP_001269617 Length = 853 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 763 ELTVAAR 769>XP_005252259 Length = 555 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 465 ELTVAAR 471>XP_006717345 Length = 781 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 691 ELTVAAR 697>XP_005252255 Length = 786 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 696 ELTVAAR 702>XP_005252253 Length = 815 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 725 ELTVAAR 731>XP_005252252 Length = 816 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 726 ELTVAAR 732>XP_005252250 Length = 824 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ELTVAAR 9 ELTVAAR Sbjct: 734 ELTVAAR 740>NP_001005367 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSELTVAAR 9 R+EL AAR Sbjct: 165 RTELVAAAR 173>NP_001188390 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSELTVAAR 9 R+EL AAR Sbjct: 165 RTELVAAAR 173>NP_065710 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSELTVAAR 9 R+EL AAR Sbjct: 165 RTELVAAAR 173>NP_006648 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSELTVAAR 9 RS+L VAA+ Sbjct: 477 RSDLQVAAK 485>NP_996848 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSELTVAAR 9 RS+L VAA+ Sbjct: 477 RSDLQVAAK 485>XP_006726337 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSELTVAAR 9 R+EL AAR Sbjct: 165 RTELVAAAR 173>XP_006724025 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSELTVAAR 9 RS+L VAA+ Sbjct: 520 RSDLQVAAK 528>XP_006724024 Length = 584 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSELTVAAR 9 RS+L VAA+ Sbjct: 520 RSDLQVAAK 528>XP_006724023 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSELTVAAR 9 RS+L VAA+ Sbjct: 477 RSDLQVAAK 485>XP_006723359 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSELTVAAR 9 R+EL AAR Sbjct: 165 RTELVAAAR 173Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.118 0.272 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 260,484 Number of extensions: 140 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |