Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_056235 18 1482 NP_055437 17 2528 NP_938057 17 2528 NP_001123614 17 2528 NP_006332 17 4312 XP_006717159 17 4312 XP_005263480 17 4312 NP_001120797 17 4312 NP_055621 16 5631 NP_001129471 16 5631 NP_059984 16 5631 NP_075267 16 5631 XP_006724893 16 5631 XP_006724892 16 5631 XP_005274762 16 5631 NP_068802 16 5631 YP_003024031 16 5631 NP_001035706 16 7355 NP_001186947 16 7355 NP_036323 16 7355 NP_612369 16 7355 NP_001186945 16 7355 XP_005255000 16 7355 XP_005254998 16 7355 NP_001092289 15 9605 NP_000914 15 9605 NP_001092288 15 9605 NP_997297 15 9605 XP_006723232 15 9605>NP_056235 Length = 597 Score = 18.1 bits (35), Expect = 1482 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 PIQAFIFT 9 P++AFIFT Sbjct: 400 PMEAFIFT 407>NP_055437 Length = 786 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PIQAFIFT 9 P+Q F+FT Sbjct: 386 PLQLFVFT 393>NP_938057 Length = 415 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PIQAFIFT 9 P+Q F+FT Sbjct: 386 PLQLFVFT 393>NP_001123614 Length = 786 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PIQAFIFT 9 P+Q F+FT Sbjct: 386 PLQLFVFT 393>NP_006332 Length = 211 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 RPIQAFIF 8 RP++ F+F Sbjct: 93 RPVEKFVF 100>XP_006717159 Length = 2293 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP+ AF+ T Sbjct: 1610 RPLTAFVIT 1618>XP_005263480 Length = 276 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 RPIQAFIF 8 RP++ F+F Sbjct: 158 RPVEKFVF 165>NP_001120797 Length = 211 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 RPIQAFIF 8 RP++ F+F Sbjct: 93 RPVEKFVF 100>NP_055621 Length = 1516 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PIQAFIF 8 PIQ F+F Sbjct: 693 PIQPFVF 699>NP_001129471 Length = 1516 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PIQAFIF 8 PIQ F+F Sbjct: 693 PIQPFVF 699>NP_059984 Length = 1871 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP +AF+ T Sbjct: 21 RPFRAFVVT 29>NP_075267 Length = 110 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PIQAFIF 8 PI AF+F Sbjct: 85 PISAFVF 91>XP_006724893 Length = 1719 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP +AF+ T Sbjct: 21 RPFRAFVVT 29>XP_006724892 Length = 1841 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP +AF+ T Sbjct: 21 RPFRAFVVT 29>XP_005274762 Length = 1853 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP +AF+ T Sbjct: 21 RPFRAFVVT 29>NP_068802 Length = 110 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 PIQAFIF 8 PI AF+F Sbjct: 85 PISAFVF 91>YP_003024031 Length = 226 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IQAFIFT 9 IQA++FT Sbjct: 209 IQAYVFT 215>NP_001035706 Length = 757 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PIQAFI 7 PIQAF+ Sbjct: 290 PIQAFV 295>NP_001186947 Length = 286 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 6/8 (75%) Query: 2 PIQAFIFT 9 P+Q +FT Sbjct: 193 PVQGLVFT 200>NP_036323 Length = 308 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 6/8 (75%) Query: 2 PIQAFIFT 9 P+Q +FT Sbjct: 215 PVQGLVFT 222>NP_612369 Length = 1372 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RPIQAFI 7 RP+ AFI Sbjct: 917 RPVSAFI 923>NP_001186945 Length = 286 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 6/8 (75%) Query: 2 PIQAFIFT 9 P+Q +FT Sbjct: 193 PVQGLVFT 200>XP_005255000 Length = 721 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PIQAFI 7 PIQAF+ Sbjct: 290 PIQAFV 295>XP_005254998 Length = 757 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 PIQAFI 7 PIQAF+ Sbjct: 290 PIQAFV 295>NP_001092289 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP+ A IF+ Sbjct: 238 RPLTAIIFS 246>NP_000914 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP+ A IF+ Sbjct: 344 RPLTAIIFS 352>NP_001092288 Length = 680 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP+ A IF+ Sbjct: 312 RPLTAIIFS 320>NP_997297 Length = 1318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PIQAFIFT 9 P +AF+FT Sbjct: 284 PEKAFLFT 291>XP_006723232 Length = 981 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RPIQAFIFT 9 RP+ + +FT Sbjct: 927 RPLSSLLFT 935Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.155 0.488 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 463,640 Number of extensions: 731 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |