Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 19 665 NP_001273171 17 4312 NP_001511 17 4312 NP_054722 17 4312 XP_005256326 17 4312 XP_006721105 17 4312 NP_000209 16 5631 NP_861463 16 5631 NP_001675 16 5631 NP_001001396 16 5631 NP_001073901 16 7355 NP_031382 16 7355 XP_005250289 16 7355 XP_006714968 16 7355 NP_001182058 15 9605 NP_001035022 15 9605 NP_060594 15 9605 NP_000617 15 9605 XP_006723846 15 9605 XP_006721291 15 9605 XP_006721290 15 9605 XP_005256079 15 9605 XP_005256078 15 9605 NP_001157903 15 9605>NP_055365 Length = 1032 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RNELLTTLT 9 R+ELLTTLT Sbjct: 430 RDELLTTLT 438>NP_001273171 Length = 2084 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RNELLTTLT 9 R+ELLTT++ Sbjct: 449 RSELLTTVS 457>NP_001511 Length = 2109 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RNELLTTLT 9 R+ELLTT++ Sbjct: 449 RSELLTTVS 457>NP_054722 Length = 1227 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RNELLTT 7 +NELLTT Sbjct: 875 KNELLTT 881>XP_005256326 Length = 1192 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RNELLTT 7 +NELLTT Sbjct: 840 KNELLTT 846>XP_006721105 Length = 2046 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RNELLTTLT 9 R+ELLTT++ Sbjct: 449 RSELLTTVS 457>NP_000209 Length = 676 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RNELLTTL 8 R EL+TTL Sbjct: 259 RQELITTL 266>NP_861463 Length = 549 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RNELLTTL 8 R EL+TTL Sbjct: 132 RQELITTL 139>NP_001675 Length = 1205 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NELLTTLT 9 NE+LT LT Sbjct: 656 NEILTELT 663>NP_001001396 Length = 1170 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NELLTTLT 9 NE+LT LT Sbjct: 656 NEILTELT 663>NP_001073901 Length = 505 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RNELLTTL 8 RNE+LT + Sbjct: 431 RNEILTAI 438>NP_031382 Length = 1761 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RNELLTTL 8 RN+LLT L Sbjct: 1339 RNDLLTIL 1346>XP_005250289 Length = 1761 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RNELLTTL 8 RN+LLT L Sbjct: 1339 RNDLLTIL 1346>XP_006714968 Length = 804 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RNELLTTLT 9 RNE +TT T Sbjct: 789 RNERITTRT 797>NP_001182058 Length = 603 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NELLTTLT 9 NELL T+T Sbjct: 152 NELLWTVT 159>NP_001035022 Length = 230 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RNELLTTLT 9 +NE L TLT Sbjct: 101 QNESLATLT 109>NP_060594 Length = 774 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RNELLTTLT 9 RN L TLT Sbjct: 756 RNSYLATLT 764>NP_000617 Length = 229 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RNELLTTLT 9 +NE L TLT Sbjct: 100 QNESLATLT 108>XP_006723846 Length = 675 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ELLTTLT 9 ELL+TLT Sbjct: 141 ELLSTLT 147>XP_006721291 Length = 715 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RNELLTTLT 9 RN L TLT Sbjct: 697 RNSYLATLT 705>XP_006721290 Length = 774 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RNELLTTLT 9 RN L TLT Sbjct: 756 RNSYLATLT 764>XP_005256079 Length = 774 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RNELLTTLT 9 RN L TLT Sbjct: 756 RNSYLATLT 764>XP_005256078 Length = 774 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RNELLTTLT 9 RN L TLT Sbjct: 756 RNSYLATLT 764>NP_001157903 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ELLTTLT 9 ELL+TLT Sbjct: 140 ELLSTLT 146Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.127 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 378,961 Number of extensions: 549 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |