Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_071748 17 4312 XP_006712749 17 4312 XP_006712748 17 4312 XP_005246823 17 4312 XP_005246822 17 4312 XP_005246821 17 4312 XP_005246820 17 4312 NP_056263 16 5631 XP_006717808 16 5631 NP_001139669 16 5631 NP_219500 16 5631 NP_056327 16 7355 NP_001269701 16 7355 NP_061887 16 7355 NP_001269706 16 7355 NP_001269708 16 7355 NP_001269705 16 7355 NP_001131076 16 7355 NP_001010924 16 7355 XP_006713163 16 7355 NP_001005407 15 9605 NP_066921 15 9605 NP_733751 15 9605 NP_005898 15 9605 NP_056045 15 9605 NP_542192 15 9605 XP_006723769 15 9605 XP_006721032 15 9605 XP_006721031 15 9605 XP_006721030 15 9605 XP_006721029 15 9605 XP_006721028 15 9605 XP_006721027 15 9605 XP_005255709 15 9605 XP_006721026 15 9605 XP_006716142 15 9605 XP_005250088 15 9605 XP_006716141 15 9605 XP_005250085 15 9605 XP_006716140 15 9605 XP_005250084 15 9605 XP_005250083 15 9605 XP_005250082 15 9605 XP_005267043 15 9605 XP_005262699 15 9605 XP_005262697 15 9605 XP_006714054 15 9605 XP_005262695 15 9605>NP_071748 Length = 414 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RMKSGLGVM 9 R+++GLG++ Sbjct: 370 RLRAGLGIL 378>XP_006712749 Length = 267 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RMKSGLGVM 9 R+++GLG++ Sbjct: 223 RLRAGLGIL 231>XP_006712748 Length = 414 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RMKSGLGVM 9 R+++GLG++ Sbjct: 370 RLRAGLGIL 378>XP_005246823 Length = 414 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RMKSGLGVM 9 R+++GLG++ Sbjct: 370 RLRAGLGIL 378>XP_005246822 Length = 425 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RMKSGLGVM 9 R+++GLG++ Sbjct: 381 RLRAGLGIL 389>XP_005246821 Length = 425 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RMKSGLGVM 9 R+++GLG++ Sbjct: 381 RLRAGLGIL 389>XP_005246820 Length = 425 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RMKSGLGVM 9 R+++GLG++ Sbjct: 381 RLRAGLGIL 389>NP_056263 Length = 203 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+KS LG M Sbjct: 53 RVKSALGAM 61>XP_006717808 Length = 373 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+KS LG M Sbjct: 223 RVKSALGAM 231>NP_001139669 Length = 7081 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG GVM Sbjct: 5192 KVKSGPGVM 5200>NP_219500 Length = 112 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 R+ SGLG+M Sbjct: 51 RVLSGLGLM 59>NP_056327 Length = 4265 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RMKSGL 6 RMKSGL Sbjct: 2831 RMKSGL 2836>NP_001269701 Length = 1173 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 R K+GLG++ Sbjct: 478 RSKTGLGLL 486>NP_061887 Length = 1135 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 R K+GLG++ Sbjct: 440 RSKTGLGLL 448>NP_001269706 Length = 996 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 R K+GLG++ Sbjct: 301 RSKTGLGLL 309>NP_001269708 Length = 996 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 R K+GLG++ Sbjct: 301 RSKTGLGLL 309>NP_001269705 Length = 924 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 R K+GLG++ Sbjct: 229 RSKTGLGLL 237>NP_001131076 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 R K+GLG++ Sbjct: 384 RSKTGLGLL 392>NP_001010924 Length = 890 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MKSGLGVM 9 +KSGLG++ Sbjct: 255 LKSGLGLV 262>XP_006713163 Length = 4265 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RMKSGL 6 RMKSGL Sbjct: 2831 RMKSGL 2836>NP_001005407 Length = 2347 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>NP_066921 Length = 2353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>NP_733751 Length = 4911 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 911 KLKSGIGAV 919>NP_005898 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 MKSGLG 7 MKSG+G Sbjct: 329 MKSGIG 334>NP_056045 Length = 1704 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KSGLGV 8 KSGLG+ Sbjct: 622 KSGLGI 627>NP_542192 Length = 433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MKSGLGV 8 +K+GLGV Sbjct: 153 LKTGLGV 159>XP_006723769 Length = 433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MKSGLGV 8 +K+GLGV Sbjct: 153 LKTGLGV 159>XP_006721032 Length = 1566 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_006721031 Length = 1612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_006721030 Length = 1618 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_006721029 Length = 1820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_006721028 Length = 2336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_006721027 Length = 2342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_005255709 Length = 2347 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_006721026 Length = 2358 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RMKSGLGVM 9 R+ +GLG M Sbjct: 603 RLATGLGTM 611>XP_006716142 Length = 4927 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 912 KLKSGIGAV 920>XP_005250088 Length = 4928 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 912 KLKSGIGAV 920>XP_006716141 Length = 4959 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 912 KLKSGIGAV 920>XP_005250085 Length = 4979 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 912 KLKSGIGAV 920>XP_006716140 Length = 4982 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 912 KLKSGIGAV 920>XP_005250084 Length = 4982 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 912 KLKSGIGAV 920>XP_005250083 Length = 4982 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 911 KLKSGIGAV 919>XP_005250082 Length = 4983 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RMKSGLGVM 9 ++KSG+G + Sbjct: 912 KLKSGIGAV 920>XP_005267043 Length = 736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 MKSGLG 7 MKSG+G Sbjct: 412 MKSGIG 417>XP_005262699 Length = 1005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KSGLGV 8 KSGLG+ Sbjct: 622 KSGLGI 627>XP_005262697 Length = 1681 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KSGLGV 8 KSGLG+ Sbjct: 622 KSGLGI 627>XP_006714054 Length = 1693 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KSGLGV 8 KSGLG+ Sbjct: 611 KSGLGI 616>XP_005262695 Length = 1704 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KSGLGV 8 KSGLG+ Sbjct: 622 KSGLGI 627Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.139 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 546,480 Number of extensions: 813 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |