Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006197 18 1482 XP_005265800 18 1482 XP_006714103 18 1482 XP_006714102 18 1482 NP_009029 17 4312 NP_001826 17 4312 XP_006724391 17 4312 XP_005261338 17 4312 XP_005277858 17 4312 XP_006724390 17 4312 XP_006724389 17 4312 XP_005277857 17 4312 NP_002406 16 5631 XP_006726603 16 5631 XP_006725215 16 5631 XP_006719239 16 5631 XP_006719237 16 5631 NP_079083 16 7355 NP_068587 15 9605 NP_001264661 15 9605 NP_003725 15 9605 XP_006726806 15 9605 XP_006722322 15 9605 XP_006719964 15 9605 XP_006719963 15 9605 XP_006719962 15 9605 XP_006719961 15 9605 XP_006719960 15 9605 XP_005266656 15 9605 XP_006710095 15 9605 NP_004285 15 9605>NP_006197 Length = 1089 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSADSVYI 9 RLSADS YI Sbjct: 1011 RLSADSGYI 1019>XP_005265800 Length = 1089 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSADSVYI 9 RLSADS YI Sbjct: 1011 RLSADSGYI 1019>XP_006714103 Length = 1111 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSADSVYI 9 RLSADS YI Sbjct: 1033 RLSADSGYI 1041>XP_006714102 Length = 1114 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSADSVYI 9 RLSADS YI Sbjct: 1036 RLSADSGYI 1044>NP_009029 Length = 1640 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 297 RISADTIFV 305>NP_001826 Length = 1583 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 297 RISADTIFV 305>XP_006724391 Length = 1567 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 318 RISADTIFV 326>XP_005261338 Length = 1570 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 318 RISADTIFV 326>XP_005277858 Length = 1604 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 318 RISADTIFV 326>XP_006724390 Length = 1623 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 280 RISADTIFV 288>XP_006724389 Length = 1653 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 318 RISADTIFV 326>XP_005277857 Length = 1661 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLSADSVYI 9 R+SAD++++ Sbjct: 318 RISADTIFV 326>NP_002406 Length = 115 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RLSADSVYI 9 R+S D VYI Sbjct: 89 RISPDRVYI 97>XP_006726603 Length = 1264 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RLSADSVY 8 +LSA+SVY Sbjct: 415 QLSAESVY 422>XP_006725215 Length = 1264 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RLSADSVY 8 +LSA+SVY Sbjct: 415 QLSAESVY 422>XP_006719239 Length = 1066 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RLSADSVY 8 +LSA+SVY Sbjct: 630 QLSAESVY 637>XP_006719237 Length = 1263 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RLSADSVY 8 +LSA+SVY Sbjct: 415 QLSAESVY 422>NP_079083 Length = 321 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SADSVY 8 SADSVY Sbjct: 21 SADSVY 26>NP_068587 Length = 580 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSADSVYI 9 LS+D VYI Sbjct: 408 LSSDLVYI 415>NP_001264661 Length = 220 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 SADSVY 8 SADS+Y Sbjct: 176 SADSIY 181>NP_003725 Length = 763 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 SADSVY 8 SADS+Y Sbjct: 719 SADSIY 724>XP_006726806 Length = 259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 SADSVY 8 SADS+Y Sbjct: 215 SADSIY 220>XP_006722322 Length = 259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 SADSVY 8 SADS+Y Sbjct: 215 SADSIY 220>XP_006719964 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RLSADSVY 8 R+S D VY Sbjct: 241 RISGDGVY 248>XP_006719963 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RLSADSVY 8 R+S D VY Sbjct: 241 RISGDGVY 248>XP_006719962 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RLSADSVY 8 R+S D VY Sbjct: 241 RISGDGVY 248>XP_006719961 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RLSADSVY 8 R+S D VY Sbjct: 241 RISGDGVY 248>XP_006719960 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RLSADSVY 8 R+S D VY Sbjct: 241 RISGDGVY 248>XP_005266656 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RLSADSVY 8 R+S D VY Sbjct: 241 RISGDGVY 248>XP_006710095 Length = 259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 SADSVY 8 SADS+Y Sbjct: 215 SADSIY 220>NP_004285 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RLSADSVY 8 R+S D VY Sbjct: 241 RISGDGVY 248Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.133 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 366,693 Number of extensions: 427 Number of successful extensions: 31 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 31 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |