Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 20 299 NP_009297 20 299 NP_001161710 19 665 NP_001161709 19 665 NP_001161708 19 665 NP_009298 19 665 NP_001129473 19 665 NP_005149 19 665 NP_001161711 19 665 XP_005245145 19 665 NP_001129472 19 665 NP_002513 17 2528 NP_055535 17 3301 XP_005270358 17 3301 NP_940980 16 5631 XP_005268686 16 5631 NP_002936 16 7355 NP_065816 16 7355 XP_006710573 16 7355 XP_006710572 16 7355 XP_006710571 16 7355 XP_006710570 16 7355 XP_006710569 16 7355 XP_006710568 16 7355 XP_006710567 16 7355 XP_006710566 16 7355 XP_005245859 16 7355 NP_001073280 15 9605 NP_005210 15 9605 NP_005786 15 9605 NP_001258680 15 9605 NP_001254772 15 9605 NP_004889 15 9605 NP_002218 15 9605 NP_060470 15 9605 NP_115729 15 9605 NP_001122089 15 9605 NP_001273540 15 9605 NP_001030 15 9605 XP_005255526 15 9605 XP_005267235 15 9605 XP_006715650 15 9605 XP_005267234 15 9605 XP_005268441 15 9605 XP_006714117 15 9605 XP_005265844 15 9605 XP_005246291 15 9605 XP_005246289 15 9605 XP_005246288 15 9605 XP_005270898 15 9605 XP_006710687 15 9605>NP_005148 Length = 1130 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT SDGK Sbjct: 175 RINTASDGK 183>NP_009297 Length = 1149 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT SDGK Sbjct: 194 RINTASDGK 202>NP_001161710 Length = 1058 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 200 RINTTADGK 208>NP_001161709 Length = 1079 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 221 RINTTADGK 229>NP_001161708 Length = 1161 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 200 RINTTADGK 208>NP_009298 Length = 1182 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 221 RINTTADGK 229>NP_001129473 Length = 542 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 200 RINTTADGK 208>NP_005149 Length = 1167 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 206 RINTTADGK 214>NP_001161711 Length = 1043 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 185 RINTTADGK 193>XP_005245145 Length = 1146 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 185 RINTTADGK 193>NP_001129472 Length = 1064 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 RINT +DGK Sbjct: 206 RINTTADGK 214>NP_002513 Length = 432 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 R+NT+ +GK Sbjct: 180 RVNTLEEGK 188>NP_055535 Length = 1235 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 INTVSDGK 9 IN+VS+GK Sbjct: 444 INSVSEGK 451>XP_005270358 Length = 1204 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 INTVSDGK 9 IN+VS+GK Sbjct: 444 INSVSEGK 451>NP_940980 Length = 2527 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RINTVSDGK 9 R+N V +GK Sbjct: 22 RLNNVQEGK 30>XP_005268686 Length = 2521 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RINTVSDGK 9 R+N V +GK Sbjct: 22 RLNNVQEGK 30>NP_002936 Length = 616 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 INTVSDGK 9 +NT+ DG+ Sbjct: 84 VNTLKDGR 91>NP_065816 Length = 5183 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710573 Length = 5177 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710572 Length = 5188 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710571 Length = 5194 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710570 Length = 5195 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710569 Length = 5212 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710568 Length = 5221 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710567 Length = 5222 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_006710566 Length = 5222 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>XP_005245859 Length = 5223 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TVSDGK 9 T+SDGK Sbjct: 1771 TISDGK 1776>NP_001073280 Length = 1263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 INTVSDGK 9 +NTV D K Sbjct: 389 LNTVKDSK 396>NP_005210 Length = 1272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 INTVSDGK 9 +NTV D K Sbjct: 398 LNTVKDSK 405>NP_005786 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 INTVSDG 8 ++T+SDG Sbjct: 423 VSTISDG 429>NP_001258680 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 INTVSDG 8 ++T+SDG Sbjct: 423 VSTISDG 429>NP_001254772 Length = 846 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RINTVS 6 RINTVS Sbjct: 411 RINTVS 416>NP_004889 Length = 846 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RINTVS 6 RINTVS Sbjct: 411 RINTVS 416>NP_002218 Length = 1154 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 INTVSDGK 9 +NT+ +GK Sbjct: 1105 VNTLKEGK 1112>NP_060470 Length = 214 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RINTVSDGK 9 +++T+SD K Sbjct: 129 KLSTISDSK 137>NP_115729 Length = 176 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 INTVSDGK 9 I TVSDG+ Sbjct: 164 IITVSDGR 171>NP_001122089 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NTVSDG 8 NTV+DG Sbjct: 480 NTVADG 485>NP_001273540 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NTVSDG 8 NTV+DG Sbjct: 507 NTVADG 512>NP_001030 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NTVSDGK 9 N+VS+GK Sbjct: 144 NSVSEGK 150>XP_005255526 Length = 616 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NTVSDGK 9 N+VS+GK Sbjct: 144 NSVSEGK 150>XP_005267235 Length = 773 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NTVSDG 8 NTV+DG Sbjct: 507 NTVADG 512>XP_006715650 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NTVSDG 8 NTV+DG Sbjct: 486 NTVADG 491>XP_005267234 Length = 795 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NTVSDG 8 NTV+DG Sbjct: 506 NTVADG 511>XP_005268441 Length = 1250 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 INTVSDGK 9 +NTV D K Sbjct: 398 LNTVKDSK 405>XP_006714117 Length = 846 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RINTVS 6 RINTVS Sbjct: 411 RINTVS 416>XP_005265844 Length = 846 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RINTVS 6 RINTVS Sbjct: 411 RINTVS 416>XP_005246291 Length = 472 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 INTVSDG 8 ++T+SDG Sbjct: 434 VSTISDG 440>XP_005246289 Length = 472 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 INTVSDG 8 ++T+SDG Sbjct: 434 VSTISDG 440>XP_005246288 Length = 472 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 INTVSDG 8 ++T+SDG Sbjct: 434 VSTISDG 440>XP_005270898 Length = 1154 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 INTVSDGK 9 +NT+ +GK Sbjct: 1105 VNTLKEGK 1112>XP_006710687 Length = 1154 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 INTVSDGK 9 +NT+ +GK Sbjct: 1105 VNTLKEGK 1112Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.129 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 488,556 Number of extensions: 425 Number of successful extensions: 51 Number of sequences better than 10000.0: 51 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 51 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |