Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 19 665 XP_006715292 19 665 NP_775771 19 869 XP_006720466 19 869 XP_005254230 19 869 XP_006720465 19 869 XP_005254228 19 869 NP_660204 17 3301 NP_002370 16 5631 NP_060453 16 5631 NP_660295 16 5631 XP_005257554 16 5631 NP_085048 16 7355 NP_005449 16 7355 XP_005252373 16 7355 NP_001885 15 9605 NP_689407 15 9605 NP_001239268 15 9605 NP_001239267 15 9605 NP_001785 15 9605 NP_005522 15 9605 NP_001193496 15 9605 NP_001276841 15 9605 NP_001020276 15 9605 NP_055455 15 9605 NP_001258671 15 9605 NP_001258670 15 9605 NP_001883 15 9605 NP_001884 15 9605 NP_620693 15 9605 XP_005256394 15 9605 XP_005256393 15 9605 XP_005247035 15 9605 XP_006712939 15 9605 XP_006712938 15 9605 XP_006712937 15 9605 XP_006712936 15 9605 XP_005247034 15 9605 XP_006711353 15 9605 XP_005245184 15 9605>NP_115927 Length = 1321 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 RG VRYASV Sbjct: 200 RGTVRYASV 208>XP_006715292 Length = 759 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 RG VRYASV Sbjct: 187 RGTVRYASV 195>NP_775771 Length = 1244 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 RG VRYAS+ Sbjct: 187 RGTVRYASI 195>XP_006720466 Length = 1175 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 RG VRYAS+ Sbjct: 118 RGTVRYASI 126>XP_005254230 Length = 1175 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 RG VRYAS+ Sbjct: 118 RGTVRYASI 126>XP_006720465 Length = 1239 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 RG VRYAS+ Sbjct: 182 RGTVRYASI 190>XP_005254228 Length = 1250 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 RG VRYAS+ Sbjct: 193 RGTVRYASI 201>NP_660204 Length = 337 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GMVRYASV 9 G VRYAS+ Sbjct: 183 GTVRYASI 190>NP_002370 Length = 496 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GMVRYAS 8 GMV YAS Sbjct: 81 GMVNYAS 87>NP_060453 Length = 446 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RGMVRYASV 9 RGM RY ++ Sbjct: 227 RGMKRYVTI 235>NP_660295 Length = 208 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 RGMVRYAS 8 RGMV Y S Sbjct: 131 RGMVMYTS 138>XP_005257554 Length = 364 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RGMVRYASV 9 RGM RY ++ Sbjct: 145 RGMKRYVTI 153>NP_085048 Length = 221 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 RGMVRYASV 9 RG + YA V Sbjct: 194 RGFINYAKV 202>NP_005449 Length = 941 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GMVRYASV 9 GM+ YAS+ Sbjct: 527 GMLSYASI 534>XP_005252373 Length = 683 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GMVRYASV 9 GM+ YAS+ Sbjct: 269 GMLSYASI 276>NP_001885 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 175 GTARYASI 182>NP_689407 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 175 GTARYASI 182>NP_001239268 Length = 842 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 GMVRY V Sbjct: 238 GMVRYRIV 245>NP_001239267 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 GMVRY V Sbjct: 275 GMVRYRIV 282>NP_001785 Length = 916 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 GMVRY V Sbjct: 312 GMVRYRIV 319>NP_005522 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 +G++R ASV Sbjct: 607 KGLIRSASV 615>NP_001193496 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 +G++R ASV Sbjct: 607 KGLIRSASV 615>NP_001276841 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 175 GTARYASI 182>NP_001020276 Length = 365 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 211 GTARYASI 218>NP_055455 Length = 1199 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GMVRYAS 8 G+VR+AS Sbjct: 785 GLVRFAS 791>NP_001258671 Length = 276 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 122 GTARYASI 129>NP_001258670 Length = 325 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 183 GTARYASI 190>NP_001883 Length = 337 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 183 GTARYASI 190>NP_001884 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 175 GTARYASI 182>NP_620693 Length = 409 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 175 GTARYASI 182>XP_005256394 Length = 427 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 175 GTARYASI 182>XP_005256393 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 GMVRYASV 9 G RYAS+ Sbjct: 175 GTARYASI 182>XP_005247035 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GMVRYAS 8 G+VR+AS Sbjct: 785 GLVRFAS 791>XP_006712939 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GMVRYAS 8 G+VR+AS Sbjct: 785 GLVRFAS 791>XP_006712938 Length = 1138 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GMVRYAS 8 G+VR+AS Sbjct: 785 GLVRFAS 791>XP_006712937 Length = 1199 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GMVRYAS 8 G+VR+AS Sbjct: 785 GLVRFAS 791>XP_006712936 Length = 1199 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GMVRYAS 8 G+VR+AS Sbjct: 785 GLVRFAS 791>XP_005247034 Length = 1199 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GMVRYAS 8 G+VR+AS Sbjct: 785 GLVRFAS 791>XP_006711353 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 +G++R ASV Sbjct: 555 KGLIRSASV 563>XP_005245184 Length = 789 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RGMVRYASV 9 +G++R ASV Sbjct: 667 KGLIRSASV 675Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 373,524 Number of extensions: 589 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |