Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245200 19 869 NP_000240 19 869 XP_005265218 19 869 NP_078966 18 1135 NP_055196 17 4312 NP_001035197 17 4312 XP_005267591 17 4312 XP_005267590 17 4312 XP_005267589 17 4312 XP_005267588 17 4312 XP_006720179 17 4312 NP_001264044 16 5631 NP_004949 16 7355 NP_001161384 16 7355 NP_001161383 16 7355 NP_078897 16 7355 NP_065875 16 7355 NP_006169 16 7355 XP_005276373 16 7355 XP_006725689 16 7355 XP_006725339 16 7355 XP_006721992 16 7355 XP_005253460 16 7355 XP_006719161 16 7355 XP_006719160 16 7355 XP_005252604 16 7355 XP_005252603 16 7355 XP_005252601 16 7355 XP_006717551 16 7355 XP_005252600 16 7355 XP_005252599 16 7355 XP_006717550 16 7355 XP_005263496 16 7355 XP_005263495 16 7355 NP_060558 16 7355 NP_003927 15 9605 NP_714928 15 9605 XP_006713930 15 9605 XP_006713929 15 9605 XP_006713928 15 9605>NP_001245200 Length = 687 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALASIS Sbjct: 100 RGEALASIS 108>NP_000240 Length = 756 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALASIS Sbjct: 100 RGEALASIS 108>XP_005265218 Length = 687 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALASIS Sbjct: 100 RGEALASIS 108>NP_078966 Length = 14507 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GDALASIS 9 GDALASIS Sbjct: 4575 GDALASIS 4582>NP_055196 Length = 1429 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+I+ Sbjct: 93 RGEALANIA 101>NP_001035197 Length = 1453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+I+ Sbjct: 93 RGEALANIA 101>XP_005267591 Length = 1275 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+I+ Sbjct: 93 RGEALANIA 101>XP_005267590 Length = 1394 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+I+ Sbjct: 93 RGEALANIA 101>XP_005267589 Length = 1418 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+I+ Sbjct: 93 RGEALANIA 101>XP_005267588 Length = 1453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+I+ Sbjct: 93 RGEALANIA 101>XP_006720179 Length = 1453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+I+ Sbjct: 93 RGEALANIA 101>NP_001264044 Length = 4516 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GDALASIS 9 GD LAS+S Sbjct: 2521 GDTLASLS 2528>NP_004949 Length = 2549 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RGDALAS 7 +GDALAS Sbjct: 1241 QGDALAS 1247>NP_001161384 Length = 833 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RGD ASIS Sbjct: 470 RGDIPASIS 478>NP_001161383 Length = 788 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RGD ASIS Sbjct: 470 RGDIPASIS 478>NP_078897 Length = 833 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RGD ASIS Sbjct: 470 RGDIPASIS 478>NP_065875 Length = 1958 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 798 GDSLASI 804>NP_006169 Length = 744 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RGDALASI 8 RGD LAS+ Sbjct: 477 RGDFLASL 484>XP_005276373 Length = 487 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RG LAS+S Sbjct: 199 RGSVLASLS 207>XP_006725689 Length = 769 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RGDALASI 8 RGD LAS+ Sbjct: 477 RGDFLASL 484>XP_006725339 Length = 769 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RGDALASI 8 RGD LAS+ Sbjct: 477 RGDFLASL 484>XP_006721992 Length = 769 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RGDALASI 8 RGD LAS+ Sbjct: 477 RGDFLASL 484>XP_005253460 Length = 464 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RG LAS+S Sbjct: 176 RGSVLASLS 184>XP_006719161 Length = 464 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RG LAS+S Sbjct: 176 RGSVLASLS 184>XP_006719160 Length = 483 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RG LAS+S Sbjct: 195 RGSVLASLS 203>XP_005252604 Length = 1386 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 798 GDSLASI 804>XP_005252603 Length = 1457 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 798 GDSLASI 804>XP_005252601 Length = 1948 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 788 GDSLASI 794>XP_006717551 Length = 1958 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 798 GDSLASI 804>XP_005252600 Length = 1958 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 798 GDSLASI 804>XP_005252599 Length = 1958 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 798 GDSLASI 804>XP_006717550 Length = 1958 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GDALASI 8 GD+LASI Sbjct: 798 GDSLASI 804>XP_005263496 Length = 2322 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RGDALAS 7 +GDALAS Sbjct: 1014 QGDALAS 1020>XP_005263495 Length = 2549 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RGDALAS 7 +GDALAS Sbjct: 1241 QGDALAS 1247>NP_060558 Length = 464 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RGDALASIS 9 RG LAS+S Sbjct: 176 RGSVLASLS 184>NP_003927 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RGDALAS 7 RGD LAS Sbjct: 248 RGDELAS 254>NP_714928 Length = 992 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+++ Sbjct: 652 RGNALATLT 660>XP_006713930 Length = 772 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+++ Sbjct: 652 RGNALATLT 660>XP_006713929 Length = 930 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+++ Sbjct: 652 RGNALATLT 660>XP_006713928 Length = 931 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RGDALASIS 9 RG+ALA+++ Sbjct: 652 RGNALATLT 660Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.126 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 431,348 Number of extensions: 680 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |