Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 19 665 NP_066124 19 665 XP_006717999 19 665 NP_005474 17 3301 NP_055730 17 4312 NP_075060 17 4312 NP_001242982 17 4312 NP_001094064 17 4312 NP_060189 17 4312 XP_006717494 17 4312 XP_006717493 17 4312 XP_006717491 17 4312 XP_006717490 17 4312 XP_006717488 17 4312 XP_006717487 17 4312 XP_006717486 17 4312 XP_005265303 17 4312 XP_005265302 17 4312 NP_005531 16 5631 NP_612372 16 5631 XP_006722230 16 5631 XP_006722229 16 5631 XP_005257838 16 5631 XP_005257837 16 5631 XP_005257836 16 5631 XP_005257835 16 5631 XP_005257834 16 5631 XP_006710684 16 5631 XP_006710683 16 5631 XP_006710682 16 5631 XP_005270893 16 5631 XP_005270892 16 5631 XP_005270890 16 5631 NP_004802 16 7355 NP_001137467 16 7355 XP_006718813 16 7355 NP_001121364 15 9605 NP_002959 15 9605 NP_060264 15 9605 NP_001243718 15 9605 NP_001243719 15 9605 NP_005174 15 9605 NP_003117 15 9605 XP_006721304 15 9605 XP_005251551 15 9605 XP_006716857 15 9605>NP_065681 Length = 1072 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 R SLDSMEN Sbjct: 694 RPSLDSMEN 702>NP_066124 Length = 1114 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 R SLDSMEN Sbjct: 694 RPSLDSMEN 702>XP_006717999 Length = 1207 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 R SLDSMEN Sbjct: 787 RPSLDSMEN 795>NP_005474 Length = 956 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ASLDSMEN 9 ASLD++EN Sbjct: 70 ASLDTLEN 77>NP_055730 Length = 1710 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 1639 RASNNSMEN 1647>NP_075060 Length = 247 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RASLDSMEN 9 + LDSMEN Sbjct: 183 KIDLDSMEN 191>NP_001242982 Length = 1709 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 1638 RASNNSMEN 1646>NP_001094064 Length = 765 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RASL+ +EN Sbjct: 257 RASLEEIEN 265>NP_060189 Length = 765 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RASL+ +EN Sbjct: 257 RASLEEIEN 265>XP_006717494 Length = 1571 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 1500 RASNNSMEN 1508>XP_006717493 Length = 1610 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 1539 RASNNSMEN 1547>XP_006717491 Length = 1677 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 1606 RASNNSMEN 1614>XP_006717490 Length = 1791 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 1720 RASNNSMEN 1728>XP_006717488 Length = 2031 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 2001 RASNNSMEN 2009>XP_006717487 Length = 2071 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 2000 RASNNSMEN 2008>XP_006717486 Length = 2072 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RAS +SMEN Sbjct: 2001 RASNNSMEN 2009>XP_005265303 Length = 765 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RASL+ +EN Sbjct: 257 RASLEEIEN 265>XP_005265302 Length = 765 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 RASL+ +EN Sbjct: 257 RASLEEIEN 265>NP_005531 Length = 913 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLDSMEN 9 SLD MEN Sbjct: 578 SLDKMEN 584>NP_612372 Length = 821 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 729 LDSMEN 734>XP_006722230 Length = 610 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 517 LDSMEN 522>XP_006722229 Length = 610 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 517 LDSMEN 522>XP_005257838 Length = 657 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 565 LDSMEN 570>XP_005257837 Length = 658 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 565 LDSMEN 570>XP_005257836 Length = 822 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 729 LDSMEN 734>XP_005257835 Length = 869 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 777 LDSMEN 782>XP_005257834 Length = 870 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LDSMEN 9 LDSMEN Sbjct: 777 LDSMEN 782>XP_006710684 Length = 794 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLDSMEN 9 SLD MEN Sbjct: 459 SLDKMEN 465>XP_006710683 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLDSMEN 9 SLD MEN Sbjct: 358 SLDKMEN 364>XP_006710682 Length = 720 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLDSMEN 9 SLD MEN Sbjct: 385 SLDKMEN 391>XP_005270893 Length = 749 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLDSMEN 9 SLD MEN Sbjct: 414 SLDKMEN 420>XP_005270892 Length = 801 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLDSMEN 9 SLD MEN Sbjct: 578 SLDKMEN 584>XP_005270890 Length = 911 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLDSMEN 9 SLD MEN Sbjct: 576 SLDKMEN 582>NP_004802 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RASLDSM 7 +ASLDSM Sbjct: 125 KASLDSM 131>NP_001137467 Length = 391 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RASLDSM 7 +ASLDSM Sbjct: 130 KASLDSM 136>XP_006718813 Length = 290 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RASLDSM 7 +ASLDSM Sbjct: 29 KASLDSM 35>NP_001121364 Length = 1227 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 +ASL S+EN Sbjct: 785 QASLKSVEN 793>NP_002959 Length = 1324 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 +ASL S+EN Sbjct: 882 QASLKSVEN 890>NP_060264 Length = 1801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SLDSMEN 9 SLD++EN Sbjct: 1120 SLDALEN 1126>NP_001243718 Length = 1966 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RASLDSMEN 9 R +LD M+N Sbjct: 1919 RLTLDEMDN 1927>NP_001243719 Length = 1912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RASLDSMEN 9 R +LD M+N Sbjct: 1865 RLTLDEMDN 1873>NP_005174 Length = 1977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RASLDSMEN 9 R +LD M+N Sbjct: 1930 RLTLDEMDN 1938>NP_003117 Length = 2419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RASLDSME 8 ++SLDS+E Sbjct: 1423 KSSLDSLE 1430>XP_006721304 Length = 1324 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RASLDSMEN 9 +ASL S+EN Sbjct: 882 QASLKSVEN 890>XP_005251551 Length = 1801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SLDSMEN 9 SLD++EN Sbjct: 1120 SLDALEN 1126>XP_006716857 Length = 1834 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SLDSMEN 9 SLD++EN Sbjct: 1153 SLDALEN 1159Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.111 0.262 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 390,601 Number of extensions: 542 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |