Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119586 19 665 NP_001263625 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119585 19 665 NP_001263624 19 665 NP_001119588 19 665 NP_001119587 19 665 NP_001119589 19 665 NP_055448 17 4312 NP_006364 16 5631 NP_001120694 16 7355 NP_075461 16 7355 NP_001120693 16 7355 NP_000059 16 7355 NP_001167551 16 7355 NP_001263627 16 7355 NP_001263628 16 7355 NP_001192222 16 7355 NP_001263626 16 7355 NP_001192223 16 7355 NP_000712 16 7355 NP_000709 16 7355 NP_001230741 16 7355 XP_006726617 16 7355 XP_006720409 16 7355 XP_006710039 16 7355 NP_003755 15 9605 NP_789845 15 9605 NP_008834 15 9605 NP_789842 15 9605 NP_789843 15 9605 XP_005267246 15 9605 XP_006715651 15 9605 NP_057119 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 158 RAMAIYKQS 166>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 119 RAMAIYKQS 127>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 158 RAMAIYKQS 166>NP_001119586 Length = 341 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 158 RAMAIYKQS 166>NP_001263625 Length = 302 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 119 RAMAIYKQS 127>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 119 RAMAIYKQS 127>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 119 RAMAIYKQS 127>NP_001119585 Length = 346 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 158 RAMAIYKQS 166>NP_001263624 Length = 307 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 119 RAMAIYKQS 127>NP_001119588 Length = 209 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 26 RAMAIYKQS 34>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 26 RAMAIYKQS 34>NP_001119589 Length = 214 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAIYNQS 9 RAMAIY QS Sbjct: 26 RAMAIYKQS 34>NP_055448 Length = 1173 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RAMAIYNQ 8 RA+AIY Q Sbjct: 631 RALAIYKQ 638>NP_006364 Length = 393 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RAMAIYNQ 8 R +A+YNQ Sbjct: 344 RLLALYNQ 351>NP_001120694 Length = 2506 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 57 RTMALYN 63>NP_075461 Length = 2512 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 57 RTMALYN 63>NP_001120693 Length = 2261 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 57 RTMALYN 63>NP_000059 Length = 2266 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 57 RTMALYN 63>NP_001167551 Length = 2263 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 57 RTMALYN 63>NP_001263627 Length = 182 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MAIYNQS 9 MAIY QS Sbjct: 1 MAIYKQS 7>NP_001263628 Length = 187 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MAIYNQS 9 MAIY QS Sbjct: 1 MAIYKQS 7>NP_001192222 Length = 2313 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 48 RTMALYN 54>NP_001263626 Length = 234 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MAIYNQS 9 MAIY QS Sbjct: 1 MAIYKQS 7>NP_001192223 Length = 2251 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 48 RTMALYN 54>NP_000712 Length = 2270 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 48 RTMALYN 54>NP_000709 Length = 2339 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 54 RTMALYN 60>NP_001230741 Length = 2237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RAMAIYN 7 R MA+YN Sbjct: 54 RTMALYN 60>XP_006726617 Length = 1688 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMAIYNQS 9 AMA YNQ+ Sbjct: 1671 AMADYNQA 1678>XP_006720409 Length = 1688 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMAIYNQS 9 AMA YNQ+ Sbjct: 1671 AMADYNQA 1678>XP_006710039 Length = 1584 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMAIYNQS 9 AMA YNQ+ Sbjct: 1567 AMADYNQA 1574>NP_003755 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RAMAIYNQS 9 RAM YNQ+ Sbjct: 141 RAMHDYNQA 149>NP_789845 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RAMAIYN 7 RAMA+Y+ Sbjct: 30 RAMALYH 36>NP_008834 Length = 305 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RAMAIYN 7 RAMA+Y+ Sbjct: 30 RAMALYH 36>NP_789842 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RAMAIYN 7 RAMA+Y+ Sbjct: 30 RAMALYH 36>NP_789843 Length = 168 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RAMAIYN 7 RAMA+Y+ Sbjct: 30 RAMALYH 36>XP_005267246 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RAMAIYNQS 9 RAM YNQ+ Sbjct: 141 RAMHDYNQA 149>XP_006715651 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RAMAIYNQS 9 RAM YNQ+ Sbjct: 141 RAMHDYNQA 149>NP_057119 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 AMAIYN 7 AMA+YN Sbjct: 58 AMALYN 63Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.120 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 331,384 Number of extensions: 258 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |