Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_001718723 19 869 NP_001177666 16 7355 NP_001035829 16 7355 NP_001166996 16 7355 NP_004591 16 7355 NP_001166995 16 7355 NP_001269716 16 7355 NP_001035828 16 7355 XP_005251528 16 7355 XP_006716838 16 7355 XP_006716837 16 7355 XP_005251526 16 7355 XP_005251525 16 7355 XP_006716836 16 7355 XP_005251524 16 7355 XP_006711560 16 7355 XP_006711559 16 7355 XP_006711558 16 7355 NP_001123520 15 9605 NP_001123521 15 9605 NP_001123522 15 9605 NP_056111 15 9605 NP_001138239 15 9605 NP_001066 15 9605 XP_006720004 15 9605 XP_005254093 15 9605 XP_006720003 15 9605 XP_006720002 15 9605 XP_005254092 15 9605 XP_006720001 15 9605 XP_006720000 15 9605 XP_005254091 15 9605 XP_006719999 15 9605 XP_006719998 15 9605 XP_006719997 15 9605 XP_006719996 15 9605 XP_006719995 15 9605 XP_006719994 15 9605 XP_006719993 15 9605 XP_006719992 15 9605 XP_006719991 15 9605 XP_006719990 15 9605 XP_006719989 15 9605 XP_006719988 15 9605 XP_006719987 15 9605 XP_006719986 15 9605 XP_006719985 15 9605>XP_001718723 Length = 1091 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PVTASMTMR 9 P+T+SMT+R Sbjct: 899 PITSSMTLR 907>NP_001177666 Length = 494 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 445 PVTLSMT 451>NP_001035829 Length = 534 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 423 PVTTDMTLQ 431>NP_001166996 Length = 518 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 423 PVTTDMTLQ 431>NP_004591 Length = 538 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 423 PVTTDMTLQ 431>NP_001166995 Length = 538 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 423 PVTTDMTLQ 431>NP_001269716 Length = 309 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 193 PVTLSMT 199>NP_001035828 Length = 525 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 423 PVTTDMTLQ 431>XP_005251528 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 193 PVTLSMT 199>XP_006716838 Length = 498 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 445 PVTLSMT 451>XP_006716837 Length = 503 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 445 PVTLSMT 451>XP_005251526 Length = 561 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 445 PVTLSMT 451>XP_005251525 Length = 566 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 441 PVTLSMT 447>XP_006716836 Length = 569 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 444 PVTLSMT 450>XP_005251524 Length = 570 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PVTASMT 7 PVT SMT Sbjct: 445 PVTLSMT 451>XP_006711560 Length = 538 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 423 PVTTDMTLQ 431>XP_006711559 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 445 PVTTDMTLQ 453>XP_006711558 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PVT MT++ Sbjct: 445 PVTTDMTLQ 453>NP_001123520 Length = 2068 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1188 PVNAGMTVK 1196>NP_001123521 Length = 1254 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>NP_001123522 Length = 1253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1188 PVNAGMTVK 1196>NP_056111 Length = 2069 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>NP_001138239 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 PVTASMTMR 9 P T S TMR Sbjct: 158 PTTLSETMR 166>NP_001066 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 PVTASMTMR 9 P T S TMR Sbjct: 242 PTTLSETMR 250>XP_006720004 Length = 1412 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_005254093 Length = 2046 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>XP_006720003 Length = 2058 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1117 PVNAGMTVK 1125>XP_006720002 Length = 2058 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1117 PVNAGMTVK 1125>XP_005254092 Length = 2062 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>XP_006720001 Length = 2073 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006720000 Length = 2084 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>XP_005254091 Length = 2093 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>XP_006719999 Length = 2095 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719998 Length = 2103 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719997 Length = 2104 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719996 Length = 2104 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719995 Length = 2106 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1188 PVNAGMTVK 1196>XP_006719994 Length = 2107 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>XP_006719993 Length = 2110 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719992 Length = 2116 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719991 Length = 2118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719990 Length = 2118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719989 Length = 2127 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719988 Length = 2129 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1188 PVNAGMTVK 1196>XP_006719987 Length = 2130 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1189 PVNAGMTVK 1197>XP_006719986 Length = 2139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208>XP_006719985 Length = 2141 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PVTASMTMR 9 PV A MT++ Sbjct: 1200 PVNAGMTVK 1208Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.114 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 262,236 Number of extensions: 378 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |