Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 18 1935 NP_005913 18 1935 XP_005267046 18 1935 XP_005267045 18 1935 NP_064569 16 7355 XP_005263972 16 7355 XP_005263971 16 7355 NP_001229295 15 9605 NP_542400 15 9605 XP_005277843 15 9605>NP_006715 Length = 1558 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PSLLSIKLL 9 PSLLSIK L Sbjct: 643 PSLLSIKQL 651>NP_005913 Length = 1608 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PSLLSIKLL 9 PSLLSIK L Sbjct: 643 PSLLSIKQL 651>XP_005267046 Length = 1554 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PSLLSIKLL 9 PSLLSIK L Sbjct: 643 PSLLSIKQL 651>XP_005267045 Length = 1604 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PSLLSIKLL 9 PSLLSIK L Sbjct: 643 PSLLSIKQL 651>NP_064569 Length = 775 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PSLLSIKLL 9 PSL+S K+L Sbjct: 567 PSLISEKIL 575>XP_005263972 Length = 776 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PSLLSIKLL 9 PSL+S K+L Sbjct: 567 PSLISEKIL 575>XP_005263971 Length = 796 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PSLLSIKLL 9 PSL+S K+L Sbjct: 567 PSLISEKIL 575>NP_001229295 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SLLSIKLL 9 SLL++KLL Sbjct: 318 SLLALKLL 325>NP_542400 Length = 459 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SLLSIKLL 9 SLL++KLL Sbjct: 318 SLLALKLL 325>XP_005277843 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SLLSIKLL 9 SLL++KLL Sbjct: 318 SLLALKLL 325Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.144 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 432,226 Number of extensions: 597 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |