Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245202 20 390 NP_001245200 20 390 NP_001161091 20 390 NP_000240 20 390 NP_001161090 20 390 NP_001161089 20 390 NP_001245203 20 390 XP_005265223 20 390 XP_005265221 20 390 XP_005265220 20 390 XP_005265218 20 390 NP_078913 17 4312 NP_000312 16 5631 NP_001018125 16 5631 NP_149075 16 5631 NP_036220 16 5631 XP_005277590 16 5631 XP_006713088 16 5631 XP_006713087 16 5631 XP_005265003 16 5631 XP_006713086 16 5631 XP_006713085 16 5631 XP_006713084 16 5631 NP_001231612 16 7355 NP_000912 16 7355 NP_775822 16 7355 XP_006719150 16 7355 XP_006719149 16 7355 XP_006717062 16 7355 XP_006717061 16 7355 XP_005251851 16 7355 XP_005251850 16 7355 NP_060797 15 9605>NP_001245202 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 340 PLFDLAMLA 348>NP_001245200 Length = 687 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 581 PLFDLAMLA 589>NP_001161091 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 340 PLFDLAMLA 348>NP_000240 Length = 756 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 581 PLFDLAMLA 589>NP_001161090 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 340 PLFDLAMLA 348>NP_001161089 Length = 658 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 483 PLFDLAMLA 491>NP_001245203 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 340 PLFDLAMLA 348>XP_005265223 Length = 415 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 240 PLFDLAMLA 248>XP_005265221 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 340 PLFDLAMLA 348>XP_005265220 Length = 515 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 340 PLFDLAMLA 348>XP_005265218 Length = 687 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLFDLVMLA 9 PLFDL MLA Sbjct: 512 PLFDLAMLA 520>NP_078913 Length = 486 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LFDLVMLA 9 +FDLVM+A Sbjct: 297 VFDLVMVA 304>NP_000312 Length = 928 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PLFDLV 6 PLFDL+ Sbjct: 568 PLFDLI 573>NP_001018125 Length = 1451 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>NP_149075 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>NP_036220 Length = 258 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PLFDLVML 8 P+FDL++L Sbjct: 140 PVFDLLIL 147>XP_005277590 Length = 900 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 126 VFDLVML 132>XP_006713088 Length = 1382 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713087 Length = 1432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>XP_005265003 Length = 1451 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713086 Length = 1458 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713085 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>XP_006713084 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFDLVML 8 +FDLVML Sbjct: 379 VFDLVML 385>NP_001231612 Length = 819 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PLFDLV 6 P+FDLV Sbjct: 373 PIFDLV 378>NP_000912 Length = 1141 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PLFDLV 6 P+FDLV Sbjct: 695 PIFDLV 700>NP_775822 Length = 871 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FDLVML 8 FDLVML Sbjct: 397 FDLVML 402>XP_006719150 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PLFDLV 6 P+FDLV Sbjct: 377 PIFDLV 382>XP_006719149 Length = 1087 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PLFDLV 6 P+FDLV Sbjct: 695 PIFDLV 700>XP_006717062 Length = 828 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FDLVML 8 FDLVML Sbjct: 339 FDLVML 344>XP_006717061 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FDLVML 8 FDLVML Sbjct: 397 FDLVML 402>XP_005251851 Length = 885 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FDLVML 8 FDLVML Sbjct: 397 FDLVML 402>XP_005251850 Length = 886 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FDLVML 8 FDLVML Sbjct: 397 FDLVML 402>NP_060797 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PLFDLV 6 PLFDL+ Sbjct: 136 PLFDLM 141Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.158 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 340,174 Number of extensions: 328 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |