Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003961 17 2528 XP_006716300 17 2528 NP_001180291 17 4312 NP_001180290 17 4312 NP_001180289 17 4312 NP_001180292 17 4312 NP_060669 17 4312 XP_005267875 17 4312 XP_005267874 17 4312 XP_006720253 17 4312 NP_001244950 16 5631 NP_001244948 16 5631 NP_001244949 16 5631 NP_001244951 16 5631 NP_001244952 16 5631 NP_000818 16 5631 NP_001107655 16 5631 NP_015564 16 5631 NP_001070711 16 5631 XP_006718886 16 5631 XP_005271575 16 5631 NP_000820 16 5631 NP_000819 16 5631 NP_001077088 16 5631 NP_000817 16 5631 NP_001077089 16 5631 NP_038472 16 7355 NP_001252516 15 9605 NP_060037 15 9605 NP_056106 15 9605 NP_000822 15 9605 NP_006461 15 9605 NP_001020775 15 9605 XP_005264472 15 9605 XP_005264470 15 9605 XP_005264469 15 9605>NP_003961 Length = 1465 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFRSVGV 7 PFRSVG+ Sbjct: 255 PFRSVGL 261>XP_006716300 Length = 1445 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFRSVGV 7 PFRSVG+ Sbjct: 255 PFRSVGL 261>NP_001180291 Length = 621 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 291 PFRSKGMS 298>NP_001180290 Length = 621 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 291 PFRSKGMS 298>NP_001180289 Length = 621 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 291 PFRSKGMS 298>NP_001180292 Length = 621 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 291 PFRSKGMS 298>NP_060669 Length = 496 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 166 PFRSKGMS 173>XP_005267875 Length = 366 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 36 PFRSKGMS 43>XP_005267874 Length = 496 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 166 PFRSKGMS 173>XP_006720253 Length = 621 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PFRS G+S Sbjct: 291 PFRSKGMS 298>NP_001244950 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 518 PFMSLGIS 525>NP_001244948 Length = 826 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 428 PFMSLGIS 435>NP_001244949 Length = 811 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 413 PFMSLGIS 420>NP_001244951 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 518 PFMSLGIS 525>NP_001244952 Length = 837 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 439 PFMSLGIS 446>NP_000818 Length = 906 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 508 PFMSLGIS 515>NP_001107655 Length = 906 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 508 PFMSLGIS 515>NP_015564 Length = 894 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 524 PFMSLGIS 531>NP_001070711 Length = 884 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 516 PFMSLGIS 523>XP_006718886 Length = 902 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 516 PFMSLGIS 523>XP_005271575 Length = 902 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 516 PFMSLGIS 523>NP_000820 Length = 902 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 516 PFMSLGIS 523>NP_000819 Length = 894 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 524 PFMSLGIS 531>NP_001077088 Length = 883 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 515 PFMSLGIS 522>NP_000817 Length = 883 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 515 PFMSLGIS 522>NP_001077089 Length = 836 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF S+G+S Sbjct: 468 PFMSLGIS 475>NP_038472 Length = 624 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PFRSVGVSA 9 PF SVG S+ Sbjct: 291 PFASVGSSS 299>NP_001252516 Length = 157 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FRSVGVS 8 F+SVG+S Sbjct: 88 FQSVGIS 94>NP_060037 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 P RS+G+S Sbjct: 113 PLRSLGLS 120>NP_056106 Length = 782 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 P+R +GVS Sbjct: 30 PYRVLGVS 37>NP_000822 Length = 919 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 PF ++GVS Sbjct: 534 PFMTLGVS 541>NP_006461 Length = 564 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PFRSVGV 7 PFR +GV Sbjct: 491 PFRRLGV 497>NP_001020775 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RSVGVSA 9 RSVGV+A Sbjct: 60 RSVGVNA 66>XP_005264472 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 P RS+G+S Sbjct: 16 PLRSLGLS 23>XP_005264470 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 P RS+G+S Sbjct: 16 PLRSLGLS 23>XP_005264469 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PFRSVGVS 8 P RS+G+S Sbjct: 16 PLRSLGLS 23Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 441,230 Number of extensions: 660 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |