Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 20 390 NP_001263689 20 390 NP_001119584 20 390 NP_001119586 20 390 NP_001263625 20 390 NP_001119590 20 390 NP_001263690 20 390 NP_001119585 20 390 NP_001263624 20 390 NP_002666 17 4312 NP_150253 17 4312 NP_150250 17 4312 NP_150243 17 4312 NP_150242 17 4312 NP_150252 17 4312 NP_002323 17 4312 NP_150249 17 4312 NP_150247 17 4312 NP_150241 17 4312 NP_073617 16 5631 NP_004645 16 7355 NP_056998 16 7355 NP_001034680 16 7355 NP_001034679 16 7355 XP_005272733 16 7355 XP_005272732 16 7355 XP_005255403 16 7355 NP_942133 15 9605 NP_942131 15 9605 NP_942134 15 9605 NP_942135 15 9605 NP_942136 15 9605 NP_075463 15 9605 NP_064601 15 9605 XP_006725385 15 9605 XP_006725384 15 9605 XP_005257325 15 9605 XP_005257324 15 9605 XP_005257323 15 9605 XP_006719812 15 9605 XP_005245476 15 9605 XP_005245475 15 9605 NP_071433 15 9605>NP_000537 Length = 393 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 128 PALNKMFCQ 136>NP_001263689 Length = 354 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 89 PALNKMFCQ 97>NP_001119584 Length = 393 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 128 PALNKMFCQ 136>NP_001119586 Length = 341 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 128 PALNKMFCQ 136>NP_001263625 Length = 302 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 89 PALNKMFCQ 97>NP_001119590 Length = 354 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 89 PALNKMFCQ 97>NP_001263690 Length = 354 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 89 PALNKMFCQ 97>NP_001119585 Length = 346 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 128 PALNKMFCQ 136>NP_001263624 Length = 307 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PALNKMF Q Sbjct: 89 PALNKMFCQ 97>NP_002666 Length = 633 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_150253 Length = 781 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_150250 Length = 435 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_150243 Length = 611 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_150242 Length = 829 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_150252 Length = 585 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_002323 Length = 4544 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PALNKMFF 8 PA+ K+FF Sbjct: 332 PAMGKVFF 339>NP_150249 Length = 423 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_150247 Length = 560 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_150241 Length = 882 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALNKMFFQ 9 PAL+ +FF+ Sbjct: 102 PALDNVFFE 110>NP_073617 Length = 391 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ALNKMF 7 ALNKMF Sbjct: 362 ALNKMF 367>NP_004645 Length = 2555 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PALNKMFFQ 9 P +NK FF+ Sbjct: 714 PDINKDFFE 722>NP_056998 Length = 958 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PALNKMFFQ 9 P+LN +F Q Sbjct: 696 PSLNHIFIQ 704>NP_001034680 Length = 2554 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PALNKMFFQ 9 P +NK FF+ Sbjct: 713 PDINKDFFE 721>NP_001034679 Length = 2570 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PALNKMFFQ 9 P +NK FF+ Sbjct: 713 PDINKDFFE 721>XP_005272733 Length = 2559 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PALNKMFFQ 9 P +NK FF+ Sbjct: 718 PDINKDFFE 726>XP_005272732 Length = 2575 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PALNKMFFQ 9 P +NK FF+ Sbjct: 718 PDINKDFFE 726>XP_005255403 Length = 744 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PALNKMFFQ 9 P+LN +F Q Sbjct: 482 PSLNHIFIQ 490>NP_942133 Length = 2346 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1195 PTLNRMSF 1202>NP_942131 Length = 2383 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1232 PTLNRMSF 1239>NP_942134 Length = 2288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1137 PTLNRMSF 1144>NP_942135 Length = 2268 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1117 PTLNRMSF 1124>NP_942136 Length = 2346 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1195 PTLNRMSF 1202>NP_075463 Length = 3013 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PALNKM 6 P+LNKM Sbjct: 2509 PSLNKM 2514>NP_064601 Length = 650 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 NKMFFQ 9 NK FFQ Sbjct: 216 NKFFFQ 221>XP_006725385 Length = 2038 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 887 PTLNRMSF 894>XP_006725384 Length = 2268 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1117 PTLNRMSF 1124>XP_005257325 Length = 2038 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 887 PTLNRMSF 894>XP_005257324 Length = 2268 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1117 PTLNRMSF 1124>XP_005257323 Length = 2268 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PALNKMFF 8 P LN+M F Sbjct: 1117 PTLNRMSF 1124>XP_006719812 Length = 3019 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PALNKM 6 P+LNKM Sbjct: 2509 PSLNKM 2514>XP_005245476 Length = 446 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 NKMFFQ 9 NK FFQ Sbjct: 12 NKFFFQ 17>XP_005245475 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 NKMFFQ 9 NK FFQ Sbjct: 85 NKFFFQ 90>NP_071433 Length = 196 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PALNKM 6 PA+NKM Sbjct: 76 PAVNKM 81Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.143 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 470,502 Number of extensions: 594 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |