Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_001185761                                                           19     665
NP_001185763                                                           19     665
NP_055459                                                              19     665
XP_006726410                                                           19     665
XP_006711719                                                           19     665
XP_006711718                                                           19     665
XP_006711717                                                           19     665
XP_006711716                                                           19     665
XP_006711715                                                           19     665
XP_006711714                                                           19     665
XP_006711713                                                           19     665
XP_006711712                                                           19     665
XP_006711711                                                           19     665
XP_006711710                                                           19     665
XP_006711709                                                           19     665
XP_005277503                                                           19     665
XP_005273038                                                           19     665
XP_006711708                                                           19     665
XP_005277500                                                           19     665
XP_006711707                                                           19     665
XP_005277499                                                           19     665
XP_006711706                                                           19     665
XP_006711705                                                           19     665
XP_006711164                                                           19     665
XP_006710143                                                           19     665
XP_006710142                                                           19     665
XP_006710141                                                           19     665
NP_001280                                                              17    2528
NP_039234                                                              17    3301
NP_444507                                                              17    3301
XP_006724088                                                           17    3301
NP_060979                                                              17    4312
NP_001243415                                                           16    5631
NP_001243417                                                           16    5631
NP_004478                                                              16    5631
NP_001243416                                                           16    5631
XP_006713654                                                           16    5631
XP_006713653                                                           16    5631
XP_005247430                                                           16    5631
XP_005247429                                                           16    5631
XP_006713652                                                           16    5631
XP_006713651                                                           16    5631
XP_006713650                                                           16    5631
XP_005247428                                                           16    5631
NP_001009992                                                           16    7355
NP_060884                                                              16    7355
NP_940931                                                              16    7355
NP_001138525                                                           16    7355
XP_006721944                                                           16    7355
XP_006721943                                                           16    7355
XP_006721942                                                           16    7355
NP_036442                                                              15    9605
>NP_001185761
          Length = 2240

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1639 NTPKEANQA 1647
>NP_001185763
          Length = 2362

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1683 NTPKEANQA 1691
>NP_055459
          Length = 2346

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1683 NTPKEANQA 1691
>XP_006726410
          Length = 2087

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1486 NTPKEANQA 1494
>XP_006711719
          Length = 2302

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1639 NTPKEANQA 1647
>XP_006711718
          Length = 1436

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   NTRKEANQA 9
           NT KEANQA
Sbjct: 690 NTPKEANQA 698
>XP_006711717
          Length = 2385

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1639 NTPKEANQA 1647
>XP_006711716
          Length = 2411

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1748 NTPKEANQA 1756
>XP_006711715
          Length = 2428

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1682 NTPKEANQA 1690
>XP_006711714
          Length = 2429

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1683 NTPKEANQA 1691
>XP_006711713
          Length = 2432

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1686 NTPKEANQA 1694
>XP_006711712
          Length = 2473

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_006711711
          Length = 2482

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1736 NTPKEANQA 1744
>XP_006711710
          Length = 2494

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1748 NTPKEANQA 1756
>XP_006711709
          Length = 2495

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1749 NTPKEANQA 1757
>XP_005277503
          Length = 2498

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_005273038
          Length = 2509

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_006711708
          Length = 2512

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_005277500
          Length = 2525

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_006711707
          Length = 2553

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_005277499
          Length = 2561

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_006711706
          Length = 2591

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1845 NTPKEANQA 1853
>XP_006711705
          Length = 2592

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1846 NTPKEANQA 1854
>XP_006711164
          Length = 2087

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    NTRKEANQA 9
            NT KEANQA
Sbjct: 1486 NTPKEANQA 1494
>XP_006710143
          Length = 562

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   NTRKEANQA 9
           NT KEANQA
Sbjct: 525 NTPKEANQA 533
>XP_006710142
          Length = 671

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   NTRKEANQA 9
           NT KEANQA
Sbjct: 634 NTPKEANQA 642
>XP_006710141
          Length = 672

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   NTRKEANQA 9
           NT KEANQA
Sbjct: 635 NTPKEANQA 643
>NP_001280
          Length = 247

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1   NTRKEANQ 8
           NT+KEAN+
Sbjct: 126 NTQKEANK 133
>NP_039234
          Length = 253

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   NTRKEANQA 9
           N+R EAN+A
Sbjct: 131 NSRPEANEA 139
>NP_444507
          Length = 686

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   NTRKEANQ 8
           NT+K+AN+
Sbjct: 565 NTKKDANE 572
>XP_006724088
          Length = 646

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   NTRKEANQ 8
           NT+K+AN+
Sbjct: 525 NTKKDANE 532
>NP_060979
          Length = 307

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   RKEANQA 9
           +KEANQA
Sbjct: 218 KKEANQA 224
>NP_001243415
          Length = 3269

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3155 NTRQEVNE 3162
>NP_001243417
          Length = 3184

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3070 NTRQEVNE 3077
>NP_004478
          Length = 3259

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3145 NTRQEVNE 3152
>NP_001243416
          Length = 3225

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3111 NTRQEVNE 3118
>XP_006713654
          Length = 3189

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3075 NTRQEVNE 3082
>XP_006713653
          Length = 3223

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3109 NTRQEVNE 3116
>XP_005247430
          Length = 3228

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3114 NTRQEVNE 3121
>XP_005247429
          Length = 3230

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3116 NTRQEVNE 3123
>XP_006713652
          Length = 3263

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3149 NTRQEVNE 3156
>XP_006713651
          Length = 3264

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3150 NTRQEVNE 3157
>XP_006713650
          Length = 3264

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3150 NTRQEVNE 3157
>XP_005247428
          Length = 3269

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NTRKEANQ 8
            NTR+E N+
Sbjct: 3155 NTRQEVNE 3162
>NP_001009992
          Length = 568

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   NTRKEANQA 9
           N+RK  NQA
Sbjct: 229 NSRKVQNQA 237
>NP_060884
          Length = 600

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 4   KEANQA 9
           KEANQA
Sbjct: 102 KEANQA 107
>NP_940931
          Length = 1503

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NTRKEANQ 8
           NTRK+A Q
Sbjct: 283 NTRKQALQ 290
>NP_001138525
          Length = 856

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NTRKEANQ 8
           NTRK+A Q
Sbjct: 227 NTRKQALQ 234
>XP_006721944
          Length = 1232

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NTRKEANQ 8
           NTRK+A Q
Sbjct: 283 NTRKQALQ 290
>XP_006721943
          Length = 1456

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NTRKEANQ 8
           NTRK+A Q
Sbjct: 283 NTRKQALQ 290
>XP_006721942
          Length = 1503

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NTRKEANQ 8
           NTRK+A Q
Sbjct: 283 NTRKQALQ 290
>NP_036442
          Length = 1232

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   RKEANQA 9
           +K+ANQA
Sbjct: 586 KKDANQA 592
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.289    0.100    0.240 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 420,867
Number of extensions: 689
Number of successful extensions: 52
Number of sequences better than 10000.0: 52
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.0 bits)
S2: 28 (15.4 bits)

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