Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_036547 17 3301 NP_001192192 17 3301 NP_001244163 17 4312 NP_001244166 17 4312 NP_001244159 17 4312 NP_001244160 17 4312 NP_001093392 17 4312 XP_006724767 17 4312 XP_006724766 17 4312 XP_006724765 17 4312 XP_006724763 17 4312 XP_006724762 17 4312 XP_006724761 17 4312 XP_006724760 17 4312 XP_006724759 17 4312 XP_006724758 17 4312 XP_006724757 17 4312 XP_006724756 17 4312 NP_705838 16 5631 NP_056250 16 7355 NP_653271 16 7355 NP_001269353 16 7355 NP_001267468 16 7355 NP_904355 16 7355 XP_005250911 16 7355 XP_005250910 16 7355 XP_006710300 16 7355 NP_078966 15 9605 XP_006723004 15 9605 NP_001116848 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NSAVSTTSA 9 NS VSTTSA Sbjct: 382 NSVVSTTSA 390>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NSAVSTTSA 9 NS VSTTSA Sbjct: 177 NSVVSTTSA 185>NP_036547 Length = 910 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NSAVSTTSA 9 NSA+ TT+A Sbjct: 438 NSAIKTTTA 446>NP_001192192 Length = 726 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NSAVSTTSA 9 NSA+ TT+A Sbjct: 254 NSAIKTTTA 262>NP_001244163 Length = 954 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 767 NQAISTTS 774>NP_001244166 Length = 954 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 767 NQAISTTS 774>NP_001244159 Length = 954 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 767 NQAISTTS 774>NP_001244160 Length = 1059 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 793 NQAISTTS 800>NP_001093392 Length = 1137 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 871 NQAISTTS 878>XP_006724767 Length = 641 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 375 NQAISTTS 382>XP_006724766 Length = 645 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 379 NQAISTTS 386>XP_006724765 Length = 652 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 386 NQAISTTS 393>XP_006724763 Length = 901 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 871 NQAISTTS 878>XP_006724762 Length = 903 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 871 NQAISTTS 878>XP_006724761 Length = 1033 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 767 NQAISTTS 774>XP_006724760 Length = 1033 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 767 NQAISTTS 774>XP_006724759 Length = 1033 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 767 NQAISTTS 774>XP_006724758 Length = 1058 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 871 NQAISTTS 878>XP_006724757 Length = 1080 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 814 NQAISTTS 821>XP_006724756 Length = 1124 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N A+STTS Sbjct: 858 NQAISTTS 865>NP_705838 Length = 4069 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NSAVSTTSA 9 NSA STT A Sbjct: 3716 NSATSTTIA 3724>NP_056250 Length = 838 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N+AV TTS Sbjct: 486 NTAVDTTS 493>NP_653271 Length = 1454 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 NSA STT+ Sbjct: 1126 NSATSTTN 1133>NP_001269353 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 NSA STT+ Sbjct: 635 NSATSTTN 642>NP_001267468 Length = 838 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N+AV TTS Sbjct: 486 NTAVDTTS 493>NP_904355 Length = 838 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N+AV TTS Sbjct: 486 NTAVDTTS 493>XP_005250911 Length = 528 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N+AV TTS Sbjct: 176 NTAVDTTS 183>XP_005250910 Length = 838 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NSAVSTTS 8 N+AV TTS Sbjct: 486 NTAVDTTS 493>XP_006710300 Length = 1116 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SAVSTTSA 9 SA+STT A Sbjct: 608 SAISTTEA 615Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NSAVSTT 7 NSA++TT Sbjct: 879 NSAITTT 885>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 NSAVSTTS 8 +SAVSTT+ Sbjct: 11530 SSAVSTTT 11537>XP_006723004 Length = 6443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 NSAVSTTS 8 +SAVSTT+ Sbjct: 3444 SSAVSTTT 3451>NP_001116848 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NSAVSTTSA 9 +SAVSTT + Sbjct: 154 SSAVSTTGS 162Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.272 0.0800 0.167 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 221,065 Number of extensions: 344 Number of successful extensions: 33 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |