Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1935 NP_001263689 18 1935 NP_001119584 18 1935 NP_001119586 18 1935 NP_001263625 18 1935 NP_001119590 18 1935 NP_001263690 18 1935 NP_001119585 18 1935 NP_001263624 18 1935 NP_001119588 18 1935 NP_001119587 18 1935 NP_001119589 18 1935 NP_001263627 18 1935 NP_001263628 18 1935 NP_001263626 18 1935 NP_004735 16 5631 NP_005579 16 5631 XP_006714475 16 5631 NP_848599 16 7355 XP_006713081 16 7355 NP_005952 15 9605 NP_071940 15 9605 XP_005268066 15 9605>NP_000537 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 247 NRRPILTII 255>NP_001263689 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 208 NRRPILTII 216>NP_001119584 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 247 NRRPILTII 255>NP_001119586 Length = 341 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 247 NRRPILTII 255>NP_001263625 Length = 302 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 208 NRRPILTII 216>NP_001119590 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 208 NRRPILTII 216>NP_001263690 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 208 NRRPILTII 216>NP_001119585 Length = 346 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 247 NRRPILTII 255>NP_001263624 Length = 307 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 208 NRRPILTII 216>NP_001119588 Length = 209 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 115 NRRPILTII 123>NP_001119587 Length = 261 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 115 NRRPILTII 123>NP_001119589 Length = 214 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 115 NRRPILTII 123>NP_001263627 Length = 182 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 88 NRRPILTII 96>NP_001263628 Length = 187 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 88 NRRPILTII 96>NP_001263626 Length = 234 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 NRR ILTII Sbjct: 88 NRRPILTII 96>NP_004735 Length = 230 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 N+RLIL +I Sbjct: 94 NKRLILGVI 102>NP_005579 Length = 746 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 NRRLILTII 9 NR++I+TI+ Sbjct: 503 NRQVIITIL 511>XP_006714475 Length = 230 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NRRLILTII 9 N+RLIL +I Sbjct: 94 NKRLILGVI 102>NP_848599 Length = 3092 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 NRRLILTII 9 +RRL+LT++ Sbjct: 2718 DRRLLLTML 2726>XP_006713081 Length = 3964 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 NRRLILTII 9 +RRL+LT++ Sbjct: 3590 DRRLLLTML 3598>NP_005952 Length = 2439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 RRLILTI 8 RRL+LT+ Sbjct: 2418 RRLVLTL 2424>NP_071940 Length = 938 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRLILTII 9 RR++LT++ Sbjct: 212 RRILLTLV 219>XP_005268066 Length = 1172 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRLILTII 9 RR++LT++ Sbjct: 446 RRILLTLV 453Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.163 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 404,045 Number of extensions: 610 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |