Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_004295                                                              20     299
NP_001171742                                                           16    5631
NP_001192273                                                           16    5631
NP_001171745                                                           16    5631
NP_001703                                                              16    5631
NP_001020083                                                           16    5631
NP_001171744                                                           16    5631
NP_001139395                                                           16    5631
NP_065894                                                              16    5631
NP_066580                                                              16    5631
XP_005254476                                                           16    5631
XP_005254474                                                           16    5631
XP_005253535                                                           16    5631
XP_005253534                                                           16    5631
XP_005253531                                                           16    5631
XP_005249963                                                           16    5631
XP_005276176                                                           16    5631
NP_602307                                                              16    5631
NP_878901                                                              16    5631
NP_001011666                                                           16    5631
NP_878902                                                              16    5631
NP_004895                                                              16    5631
NP_803875                                                              16    5631
NP_001136272                                                           16    7355
NP_068779                                                              16    7355
NP_877495                                                              16    7355
NP_078809                                                              16    7355
NP_000482                                                              16    7355
NP_001184249                                                           16    7355
NP_009135                                                              16    7355
NP_001269285                                                           16    7355
NP_599028                                                              16    7355
NP_439897                                                              16    7355
NP_067628                                                              16    7355
XP_005256012                                                           16    7355
XP_005246039                                                           16    7355
NP_004482                                                              16    7355
NP_570629                                                              15    9605
NP_001034439                                                           15    9605
NP_001927                                                              15    9605
NP_001277181                                                           15    9605
NP_001161329                                                           15    9605
NP_840060                                                              15    9605
NP_958505                                                              15    9605
NP_001167543                                                           15    9605
NP_001167542                                                           15    9605
NP_001041659                                                           15    9605
NP_115659                                                              15    9605
NP_001041660                                                           15    9605
NP_001260                                                              15    9605
NP_653164                                                              15    9605
NP_001171628                                                           15    9605
NP_062555                                                              15    9605
NP_002716                                                              15    9605
XP_006715935                                                           15    9605
XP_006715934                                                           15    9605
XP_005248535                                                           15    9605
NP_001041664                                                           15    9605
>NP_004295
          Length = 1620

 Score = 20.4 bits (41), Expect =   299
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   NNSVLGLNG 9
           N+SVLGLNG
Sbjct: 864 NSSVLGLNG 872
>NP_001171742
          Length = 430

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSVLGLN 8
           NNSV G N
Sbjct: 302 NNSVTGCN 309
>NP_001192273
          Length = 468

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSVLGLN 8
           NNSV G N
Sbjct: 302 NNSVTGCN 309
>NP_001171745
          Length = 368

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSVLGLN 8
           NNSV G N
Sbjct: 302 NNSVTGCN 309
>NP_001703
          Length = 526

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSVLGLN 8
           NNSV G N
Sbjct: 302 NNSVTGCN 309
>NP_001020083
          Length = 464

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSVLGLN 8
           NNSV G N
Sbjct: 302 NNSVTGCN 309
>NP_001171744
          Length = 461

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSVLGLN 8
           NNSV G N
Sbjct: 302 NNSVTGCN 309
>NP_001139395
          Length = 1154

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   NNSVLGLN 8
           NN++LG N
Sbjct: 787 NNTILGRN 794
>NP_065894
          Length = 1400

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NNSVLGLN 8
            NN++LG N
Sbjct: 1033 NNTILGRN 1040
>NP_066580
          Length = 670

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   NNSVLGLN 8
           N+SV+G+N
Sbjct: 412 NSSVVGIN 419
>XP_005254476
          Length = 1400

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NNSVLGLN 8
            NN++LG N
Sbjct: 1033 NNTILGRN 1040
>XP_005254474
          Length = 1406

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1    NNSVLGLN 8
            NN++LG N
Sbjct: 1039 NNTILGRN 1046
>XP_005253535
          Length = 579

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   NNSVLGLN 8
           N+SV+G+N
Sbjct: 410 NSSVVGIN 417
>XP_005253534
          Length = 650

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   NNSVLGLN 8
           N+SV+G+N
Sbjct: 392 NSSVVGIN 399
>XP_005253531
          Length = 670

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   NNSVLGLN 8
           N+SV+G+N
Sbjct: 412 NSSVVGIN 419
>XP_005249963
          Length = 501

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1   NNSVLGLNG 9
           N+S++G+ G
Sbjct: 198 NSSIMGMQG 206
>XP_005276176
          Length = 271

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1  NNSVLGLN 8
          NNS LG N
Sbjct: 54 NNSYLGYN 61
>NP_602307
          Length = 670

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   NNSVLGLN 8
           N+SV+G+N
Sbjct: 412 NSSVVGIN 419
>NP_878901
          Length = 508

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1   NNSVLGLNG 9
           N+S++G+ G
Sbjct: 205 NSSIMGMQG 213
>NP_001011666
          Length = 369

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1  NNSVLGLNG 9
          N+S++G+ G
Sbjct: 66 NSSIMGMQG 74
>NP_878902
          Length = 475

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1   NNSVLGLNG 9
           N+S++G+ G
Sbjct: 172 NSSIMGMQG 180
>NP_004895
          Length = 501

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1   NNSVLGLNG 9
           N+S++G+ G
Sbjct: 198 NSSIMGMQG 206
>NP_803875
          Length = 4243

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1    NNSVLGLNG 9
            NN V GL+G
Sbjct: 4132 NNQVNGLSG 4140
>NP_001136272
          Length = 3144

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2    NSVLGLNG 9
            NSV+ LNG
Sbjct: 1127 NSVICLNG 1134
>NP_068779
          Length = 350

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 2  NSVLGLN 8
          N+V+GLN
Sbjct: 7  NAVIGLN 13
>NP_877495
          Length = 271

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 2  NSVLGLN 8
          N+V+GLN
Sbjct: 7  NAVIGLN 13
>NP_078809
          Length = 411

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 1   NNSVLGLNG 9
           N  VLG NG
Sbjct: 244 NGIVLGTNG 252
>NP_000482
          Length = 253

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   NSVLGLNG 9
           NS+LG+ G
Sbjct: 230 NSLLGMEG 237
>NP_001184249
          Length = 197

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 2  NSVLGLN 8
          N+V+GLN
Sbjct: 7  NAVIGLN 13
>NP_009135
          Length = 824

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NNSVLGLN 8
           NNSV GL+
Sbjct: 498 NNSVSGLS 505
>NP_001269285
          Length = 656

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NNSVLGLN 8
           N SVLGL+
Sbjct: 131 NTSVLGLS 138
>NP_599028
          Length = 663

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NNSVLGLN 8
           N SVLGL+
Sbjct: 131 NTSVLGLS 138
>NP_439897
          Length = 656

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   NNSVLGLN 8
           N SVLGL+
Sbjct: 131 NTSVLGLS 138
>NP_067628
          Length = 395

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 1   NNSVLGLNG 9
           N  VLG NG
Sbjct: 222 NGIVLGTNG 230
>XP_005256012
          Length = 395

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 1   NNSVLGLNG 9
           N  VLG NG
Sbjct: 222 NGIVLGTNG 230
>XP_005246039
          Length = 253

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   NSVLGLNG 9
           NS+LG+ G
Sbjct: 230 NSLLGMEG 237
>NP_004482
          Length = 1499

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSVLGLNG 9
          N SV+GL+G
Sbjct: 15 NISVVGLSG 23
>NP_570629
          Length = 865

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   VLGLNG 9
           V+GLNG
Sbjct: 358 VIGLNG 363
>NP_001034439
          Length = 801

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   VLGLNG 9
           V+GLNG
Sbjct: 294 VIGLNG 299
>NP_001927
          Length = 803

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   VLGLNG 9
           V+GLNG
Sbjct: 296 VIGLNG 301
>NP_001277181
          Length = 758

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   VLGLNG 9
           V+GLNG
Sbjct: 251 VIGLNG 256
>NP_001161329
          Length = 515

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2   NSVLGLN 8
           NS+LG N
Sbjct: 505 NSILGTN 511
>NP_840060
          Length = 423

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   NNSVLGLNG 9
           N  +LG+NG
Sbjct: 229 NKILLGVNG 237
>NP_958505
          Length = 382

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   NNSVLGLNG 9
           NNS+  +NG
Sbjct: 320 NNSIEKING 328
>NP_001167543
          Length = 461

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   NNSVLGLNG 9
           N  +LG+NG
Sbjct: 229 NKILLGVNG 237
>NP_001167542
          Length = 420

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   NNSVLGLNG 9
           N  +LG+NG
Sbjct: 229 NKILLGVNG 237
>NP_001041659
          Length = 452

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   NNSVLGL 7
           NN V+GL
Sbjct: 180 NNGVIGL 186
>NP_115659
          Length = 388

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   SVLGLNG 9
           S+LGL+G
Sbjct: 291 SILGLSG 297
>NP_001041660
          Length = 438

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   NNSVLGL 7
           NN V+GL
Sbjct: 166 NNGVIGL 172
>NP_001260
          Length = 421

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   NNSVLGL 7
           NN V+GL
Sbjct: 149 NNGVIGL 155
>NP_653164
          Length = 311

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   NNSVLGL 7
           NN VLG+
Sbjct: 96  NNQVLGI 102
>NP_001171628
          Length = 660

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2  NSVLGL 7
          NSVLGL
Sbjct: 24 NSVLGL 29
>NP_062555
          Length = 734

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2  NSVLGL 7
          NSVLGL
Sbjct: 24 NSVLGL 29
>NP_002716
          Length = 382

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   NNSVLGLNG 9
           NNS+  +NG
Sbjct: 320 NNSIEKING 328
>XP_006715935
          Length = 804

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   VLGLNG 9
           V+GLNG
Sbjct: 297 VIGLNG 302
>XP_006715934
          Length = 804

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   VLGLNG 9
           V+GLNG
Sbjct: 297 VIGLNG 302
>XP_005248535
          Length = 390

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   NNSVLGLNG 9
           N  +LG+NG
Sbjct: 158 NKILLGVNG 166
>NP_001041664
          Length = 421

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   NNSVLGL 7
           NN V+GL
Sbjct: 149 NNGVIGL 155
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.304    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 535,519
Number of extensions: 1240
Number of successful extensions: 58
Number of sequences better than 10000.0: 58
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.2 bits)
S2: 28 (15.4 bits)

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