Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_477512 17 4312 XP_005260209 17 4312 NP_001360 16 7355 NP_005227 16 7355 NP_079520 16 7355 NP_878915 16 7355 XP_005248319 16 7355 XP_006712845 16 7355 XP_005264086 16 7355 XP_005264084 16 7355 XP_005264083 16 7355 XP_006712844 16 7355 XP_005264082 16 7355 XP_005264081 16 7355 XP_005264080 16 7355 XP_006712843 16 7355 XP_005264079 16 7355 NP_001275685 15 9605 NP_001028721 15 9605 NP_054892 15 9605>NP_477512 Length = 454 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISQKMEI 8 N+SQ ME+ Sbjct: 74 NVSQSMEV 81>XP_005260209 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISQKMEI 8 N+SQ ME+ Sbjct: 98 NVSQSMEV 105>NP_001360 Length = 4624 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ISQKMEIS 9 ++QK+EIS Sbjct: 3795 VTQKLEIS 3802>NP_005227 Length = 916 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ISQKMEI 8 IS+KMEI Sbjct: 357 ISEKMEI 363>NP_079520 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>NP_878915 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_005248319 Length = 4609 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ISQKMEIS 9 ++QK+EIS Sbjct: 3780 VTQKLEIS 3787>XP_006712845 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_005264086 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_005264084 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_005264083 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_006712844 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_005264082 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_005264081 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_005264080 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 249 NIAQREEIS 257>XP_006712843 Length = 891 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 449 NIAQREEIS 457>XP_005264079 Length = 893 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQKMEIS 9 NI+Q+ EIS Sbjct: 444 NIAQREEIS 452>NP_001275685 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NISQKM 6 N+SQKM Sbjct: 122 NVSQKM 127>NP_001028721 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NISQKM 6 N+SQKM Sbjct: 122 NVSQKM 127>NP_054892 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NISQKM 6 N+SQKM Sbjct: 122 NVSQKM 127Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.114 0.252 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 364,000 Number of extensions: 354 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |