Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000312 20 299 NP_116200 18 1482 XP_005271768 18 1482 XP_005271766 18 1482 NP_477352 17 4312 XP_005261692 17 4312 XP_005261691 17 4312 NP_003861 16 7355 NP_116188 16 7355 NP_001188358 16 7355 NP_036427 16 7355 NP_036298 16 7355 NP_001186210 16 7355 NP_112591 16 7355 NP_001139118 16 7355 NP_036203 16 7355 XP_006724246 16 7355 XP_006724245 16 7355 XP_006724244 16 7355 XP_006724243 16 7355 XP_005261477 16 7355 XP_005261476 16 7355 XP_005261474 16 7355 XP_006724242 16 7355 XP_005261473 16 7355 XP_005261472 16 7355 XP_005255041 16 7355 XP_005251496 16 7355 NP_001001712 16 7355 NP_037412 15 9605 NP_065874 15 9605 NP_001123363 15 9605 NP_001184225 15 9605 NP_001184224 15 9605 NP_849193 15 9605 XP_005273918 15 9605 XP_006713080 15 9605 NP_001384 15 9605>NP_000312 Length = 928 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MYRLAYLRL 9 +YRLAYLRL Sbjct: 654 VYRLAYLRL 662>NP_116200 Length = 411 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 YRLAYLRL 9 YRL YLRL Sbjct: 34 YRLKYLRL 41>XP_005271768 Length = 211 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 YRLAYLRL 9 YRL YLRL Sbjct: 34 YRLKYLRL 41>XP_005271766 Length = 264 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 YRLAYLRL 9 YRL YLRL Sbjct: 34 YRLKYLRL 41>NP_477352 Length = 2102 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MYRLAYLRL 9 +YRL Y+R+ Sbjct: 896 VYRLEYMRV 904>XP_005261692 Length = 1854 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MYRLAYLRL 9 +YRL Y+R+ Sbjct: 924 VYRLEYMRV 932>XP_005261691 Length = 2099 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MYRLAYLRL 9 +YRL Y+R+ Sbjct: 924 VYRLEYMRV 932>NP_003861 Length = 1657 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 RLAYLR 8 RLAYLR Sbjct: 798 RLAYLR 803>NP_116188 Length = 267 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 YRLAYLR 8 +R+AYLR Sbjct: 218 HRIAYLR 224>NP_001188358 Length = 2170 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1480 LYRLAFL 1486>NP_036427 Length = 2220 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1530 LYRLAFL 1536>NP_036298 Length = 956 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MYRLAY 6 MYRL+Y Sbjct: 371 MYRLSY 376>NP_001186210 Length = 2220 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1530 LYRLAFL 1536>NP_112591 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MYRLAYLRL 9 M+R AY +L Sbjct: 85 MFRFAYYKL 93>NP_001139118 Length = 216 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MYRLAYLRL 9 M+R AY +L Sbjct: 85 MFRFAYYKL 93>NP_036203 Length = 195 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 MYRLAYL 7 MYR AYL Sbjct: 144 MYRPAYL 150>XP_006724246 Length = 2103 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1560 LYRLAFL 1566>XP_006724245 Length = 2191 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1501 LYRLAFL 1507>XP_006724244 Length = 2191 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1530 LYRLAFL 1536>XP_006724243 Length = 2196 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1501 LYRLAFL 1507>XP_005261477 Length = 2200 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1560 LYRLAFL 1566>XP_005261476 Length = 2210 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1515 LYRLAFL 1521>XP_005261474 Length = 2225 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1530 LYRLAFL 1536>XP_006724242 Length = 2226 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1560 LYRLAFL 1566>XP_005261473 Length = 2250 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1560 LYRLAFL 1566>XP_005261472 Length = 2255 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MYRLAYL 7 +YRLA+L Sbjct: 1560 LYRLAFL 1566>XP_005255041 Length = 1191 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 RLAYLR 8 RLAYLR Sbjct: 798 RLAYLR 803>XP_005251496 Length = 653 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MYRLAY 6 MYRL+Y Sbjct: 371 MYRLSY 376>NP_001001712 Length = 200 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YRLAYLRL 9 Y L YLRL Sbjct: 138 YGLVYLRL 145>NP_037412 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YRLAYLRL 9 +RL++LRL Sbjct: 464 FRLSWLRL 471>NP_065874 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YRLAYLRL 9 YRLA +RL Sbjct: 139 YRLAPMRL 146>NP_001123363 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LAYLRL 9 LAYLRL Sbjct: 148 LAYLRL 153>NP_001184225 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LAYLRL 9 LAYLRL Sbjct: 444 LAYLRL 449>NP_001184224 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LAYLRL 9 LAYLRL Sbjct: 444 LAYLRL 449>NP_849193 Length = 826 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 MYRLAYLR 8 MY+++Y R Sbjct: 717 MYKMSYYR 724>XP_005273918 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YRLAYLRL 9 +RL++LRL Sbjct: 464 FRLSWLRL 471>XP_006713080 Length = 804 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 MYRLAYLR 8 MY+++Y R Sbjct: 717 MYKMSYYR 724>NP_001384 Length = 699 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LAYLRL 9 LAYLRL Sbjct: 466 LAYLRL 471Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.352 0.157 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 432,980 Number of extensions: 722 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |