Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_060287 17 3301 NP_001153519 17 4312 NP_065835 17 4312 NP_001193997 17 4312 NP_055485 17 4312 NP_001193998 17 4312 NP_001193996 17 4312 NP_055906 16 5631 XP_005267508 16 5631 NP_079494 16 7355 NP_872282 16 7355 XP_005267777 16 7355 XP_005267208 16 7355 NP_006247 15 9605 NP_001099038 15 9605 NP_001153239 15 9605 NP_054757 15 9605 NP_001099037 15 9605 NP_001099036 15 9605 NP_071396 15 9605 XP_005268693 15 9605 XP_006719295 15 9605 XP_006715771 15 9605 XP_006715770 15 9605 XP_006715769 15 9605 XP_006715230 15 9605 XP_006715229 15 9605 XP_005249350 15 9605 XP_005249349 15 9605 XP_005249348 15 9605 XP_005249347 15 9605 XP_005249346 15 9605 XP_005271088 15 9605 NP_689532 15 9605>NP_060287 Length = 234 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 ETLFD+V Sbjct: 195 ETLFDLV 201>NP_001153519 Length = 820 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TETLFDI 8 T+TLFD+ Sbjct: 116 TDTLFDV 122>NP_065835 Length = 825 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TETLFDI 8 T+TLFD+ Sbjct: 116 TDTLFDV 122>NP_001193997 Length = 451 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 ETLFDI+ Sbjct: 100 ETLFDIL 106>NP_055485 Length = 353 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 ETLFDI+ Sbjct: 68 ETLFDIL 74>NP_001193998 Length = 423 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 ETLFDI+ Sbjct: 72 ETLFDIL 78>NP_001193996 Length = 419 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 ETLFDI+ Sbjct: 68 ETLFDIL 74>NP_055906 Length = 1720 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 MTETLFDIV 9 MTE L DIV Sbjct: 1627 MTEKLADIV 1635>XP_005267508 Length = 1773 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 MTETLFDIV 9 MTE L DIV Sbjct: 1680 MTEKLADIV 1688>NP_079494 Length = 244 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TETLFDIV 9 TETL D+V Sbjct: 91 TETLRDVV 98>NP_872282 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TETLFDIV 9 T+T++D+V Sbjct: 32 TDTVYDVV 39>XP_005267777 Length = 233 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TETLFDIV 9 T+T++D+V Sbjct: 32 TDTVYDVV 39>XP_005267208 Length = 211 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TETLFDIV 9 TETL D+V Sbjct: 91 TETLRDVV 98>NP_006247 Length = 984 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TETLFDI 8 +ET+FDI Sbjct: 603 SETVFDI 609>NP_001099038 Length = 1749 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>NP_001153239 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 +TLFDI+ Sbjct: 66 DTLFDIL 72>NP_054757 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 +TLFDI+ Sbjct: 66 DTLFDIL 72>NP_001099037 Length = 1757 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>NP_001099036 Length = 1770 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>NP_071396 Length = 1805 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>XP_005268693 Length = 99 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTETLFDIV 9 +TETL+D V Sbjct: 10 ITETLWDQV 18>XP_006719295 Length = 127 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTETLFDIV 9 +TETL+D V Sbjct: 38 ITETLWDQV 46>XP_006715771 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 +TLFDI+ Sbjct: 66 DTLFDIL 72>XP_006715770 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 +TLFDI+ Sbjct: 66 DTLFDIL 72>XP_006715769 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ETLFDIV 9 +TLFDI+ Sbjct: 66 DTLFDIL 72>XP_006715230 Length = 1734 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 118 ITQTLYDL 125>XP_006715229 Length = 1782 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 166 ITQTLYDL 173>XP_005249350 Length = 1810 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>XP_005249349 Length = 1824 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>XP_005249348 Length = 1832 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>XP_005249347 Length = 1837 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>XP_005249346 Length = 1845 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MTETLFDI 8 +T+TL+D+ Sbjct: 229 ITQTLYDL 236>XP_005271088 Length = 968 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TETLFDI 8 +ET+FDI Sbjct: 587 SETVFDI 593>NP_689532 Length = 127 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTETLFDIV 9 +TETL+D V Sbjct: 38 ITETLWDQV 46Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.143 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 404,862 Number of extensions: 774 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |