Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 20 390 NP_001091680 20 390 NP_001091679 20 390 XP_006713048 20 390 XP_006713047 20 390 XP_006713046 20 390 XP_005264943 20 390 NP_075252 17 2528 NP_998812 17 2528 NP_002002 17 2528 XP_005265895 17 2528 XP_005265894 17 2528 NP_000375 16 5631 NP_060764 16 5631 NP_005088 16 7355 NP_054644 16 7355 NP_000784 16 7355 NP_001007024 16 7355 NP_001229431 16 7355 NP_064450 16 7355 NP_001229432 16 7355 XP_005273257 16 7355 NP_001431 15 9605 XP_006716365 15 9605>NP_001895 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 MLKH VVNL Sbjct: 131 MLKHAVVNL 139>NP_001091680 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 MLKH VVNL Sbjct: 131 MLKHAVVNL 139>NP_001091679 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 MLKH VVNL Sbjct: 131 MLKHAVVNL 139>XP_006713048 Length = 720 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 MLKH VVNL Sbjct: 131 MLKHAVVNL 139>XP_006713047 Length = 774 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 MLKH VVNL Sbjct: 124 MLKHAVVNL 132>XP_006713046 Length = 774 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 MLKH VVNL Sbjct: 124 MLKHAVVNL 132>XP_005264943 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 MLKH VVNL Sbjct: 131 MLKHAVVNL 139>NP_075252 Length = 762 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKHVVVN 8 LKH+V+N Sbjct: 284 LKHIVIN 290>NP_998812 Length = 802 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKHVVVN 8 LKH+V+N Sbjct: 284 LKHIVIN 290>NP_002002 Length = 802 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKHVVVN 8 LKH+V+N Sbjct: 284 LKHIVIN 290>XP_005265895 Length = 802 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKHVVVN 8 LKH+V+N Sbjct: 284 LKHIVIN 290>XP_005265894 Length = 834 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKHVVVN 8 LKH+V+N Sbjct: 316 LKHIVIN 322>NP_000375 Length = 4563 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LKHVVVNL 9 +KH V+NL Sbjct: 2317 VKHFVINL 2324>NP_060764 Length = 538 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KHVVVNL 9 KH+VVN+ Sbjct: 339 KHLVVNI 345>NP_005088 Length = 557 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KHVVVNL 9 KHV+V+L Sbjct: 549 KHVIVDL 555>NP_054644 Length = 273 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 +LKHVV+ L Sbjct: 33 LLKHVVLLL 41>NP_000784 Length = 273 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 +LKHVV+ L Sbjct: 33 LLKHVVLLL 41>NP_001007024 Length = 309 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 +LKHVV+ L Sbjct: 33 LLKHVVLLL 41>NP_001229431 Length = 146 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 +LKHVV+ L Sbjct: 33 LLKHVVLLL 41>NP_064450 Length = 1722 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LKHVVVNL 9 ++H VVNL Sbjct: 1382 IQHAVVNL 1389>NP_001229432 Length = 110 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MLKHVVVNL 9 +LKHVV+ L Sbjct: 33 LLKHVVLLL 41>XP_005273257 Length = 1726 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LKHVVVNL 9 ++H VVNL Sbjct: 1386 IQHAVVNL 1393>NP_001431 Length = 919 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 HVVVNL 9 HV++NL Sbjct: 273 HVIINL 278>XP_006716365 Length = 919 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 HVVVNL 9 HV++NL Sbjct: 273 HVIINL 278Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.143 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 525,629 Number of extensions: 621 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |