Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000360 19 665 XP_005268094 19 665 NP_000224 19 869 XP_005264366 19 869 XP_006712078 19 869 NP_852111 18 1482 NP_000136 18 1482 NP_001268885 16 7355 NP_443128 16 7355 NP_003089 15 9605 NP_001026794 15 9605 NP_000244 15 9605 NP_005579 15 9605 NP_963840 15 9605 XP_005260574 15 9605 XP_005249051 15 9605 XP_005263082 15 9605>NP_000360 Length = 764 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MAVLIFIDF 9 MAVLIF DF Sbjct: 626 MAVLIFTDF 634>XP_005268094 Length = 764 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MAVLIFIDF 9 MAVLIF DF Sbjct: 626 MAVLIFTDF 634>NP_000224 Length = 699 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MAVLIFIDF 9 MA+LIF DF Sbjct: 571 MAILIFTDF 579>XP_005264366 Length = 380 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MAVLIFIDF 9 MA+LIF DF Sbjct: 252 MAILIFTDF 260>XP_006712078 Length = 389 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MAVLIFIDF 9 MA+LIF DF Sbjct: 261 MAILIFTDF 269>NP_852111 Length = 669 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MAVLIFIDF 9 MA+LIF DF Sbjct: 548 MAMLIFTDF 556>NP_000136 Length = 695 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MAVLIFIDF 9 MA+LIF DF Sbjct: 574 MAMLIFTDF 582>NP_001268885 Length = 3631 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LIFIDF 9 L+FIDF Sbjct: 282 LVFIDF 287>NP_443128 Length = 3487 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LIFIDF 9 L+FIDF Sbjct: 242 LVFIDF 247>NP_003089 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AVLIFIDF 9 A L+F+DF Sbjct: 461 ASLLFLDF 468>NP_001026794 Length = 1061 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 MAVLIFIDF 9 M ++F+DF Sbjct: 885 MTHIVFVDF 893>NP_000244 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AVLIFIDF 9 A+L F+DF Sbjct: 374 AILDFLDF 381>NP_005579 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VLIFIDF 9 ++IF+DF Sbjct: 587 LIIFVDF 593>NP_963840 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 LIFIDF 9 L+F+DF Sbjct: 185 LVFVDF 190>XP_005260574 Length = 504 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AVLIFIDF 9 A L+F+DF Sbjct: 461 ASLLFLDF 468>XP_005249051 Length = 975 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 MAVLIFIDF 9 M ++F+DF Sbjct: 885 MTHIVFVDF 893>XP_005263082 Length = 921 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AVLIFIDF 9 A+L F+DF Sbjct: 401 AILDFLDF 408Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.363 0.171 0.491 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 312,300 Number of extensions: 354 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |