Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 18 1135 NP_001091680 18 1135 NP_001091679 18 1135 XP_006713048 18 1135 XP_005264943 18 1135 NP_001166028 17 4312 NP_005886 17 4312 XP_005266224 17 4312 XP_006719803 17 4312 XP_005266222 17 4312 XP_005266221 17 4312 XP_006719802 17 4312 XP_006719801 17 4312 XP_006719800 17 4312 XP_006719799 17 4312 XP_005266219 17 4312 NP_001361 16 5631 XP_006712019 16 5631 NP_001278017 16 7355 NP_114157 16 7355 NP_001192136 16 7355 NP_919231 16 7355 NP_001192135 16 7355 NP_786886 16 7355 NP_001036143 16 7355 NP_001036144 16 7355 XP_005261221 16 7355 XP_006723474 16 7355 XP_005259362 16 7355 NP_115499 15 9605 NP_954648 15 9605 NP_954649 15 9605 NP_001271271 15 9605 NP_001193830 15 9605 NP_078838 15 9605 NP_001073333 15 9605 XP_005249957 15 9605 NP_006015 15 9605>NP_001895 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 MATQA LME Sbjct: 1 MATQADLME 9>NP_001091680 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 MATQA LME Sbjct: 1 MATQADLME 9>NP_001091679 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 MATQA LME Sbjct: 1 MATQADLME 9>XP_006713048 Length = 720 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 MATQA LME Sbjct: 1 MATQADLME 9>XP_005264943 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 MATQA LME Sbjct: 1 MATQADLME 9>NP_001166028 Length = 1134 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 605 TQAGLLE 611>NP_005886 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_005266224 Length = 1307 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 414 TQAGLLE 420>XP_006719803 Length = 1407 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 514 TQAGLLE 520>XP_005266222 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 565 TQAGLLE 571>XP_005266221 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 565 TQAGLLE 571>XP_006719802 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 565 TQAGLLE 571>XP_006719801 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_006719800 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_006719799 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 605 TQAGLLE 611>XP_005266219 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TQAGLME 9 TQAGL+E Sbjct: 605 TQAGLLE 611>NP_001361 Length = 4158 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATQAGLME 9 ATQ GL+E Sbjct: 1155 ATQPGLLE 1162>XP_006712019 Length = 4158 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATQAGLME 9 ATQ GL+E Sbjct: 1155 ATQPGLLE 1162>NP_001278017 Length = 2912 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 M+T+ GL+E Sbjct: 1150 MSTEPGLLE 1158>NP_114157 Length = 2873 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 M+T+ GL+E Sbjct: 1111 MSTEPGLLE 1119>NP_001192136 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ATQAGLM 8 ATQAGL+ Sbjct: 304 ATQAGLV 310>NP_919231 Length = 591 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ATQAGLM 8 ATQAGL+ Sbjct: 344 ATQAGLV 350>NP_001192135 Length = 489 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ATQAGLM 8 ATQAGL+ Sbjct: 344 ATQAGLV 350>NP_786886 Length = 193 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MATQAGL 7 MAT+AGL Sbjct: 173 MATRAGL 179>NP_001036143 Length = 193 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MATQAGL 7 MAT+AGL Sbjct: 173 MATRAGL 179>NP_001036144 Length = 193 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MATQAGL 7 MAT+AGL Sbjct: 173 MATRAGL 179>XP_005261221 Length = 473 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ATQAGLM 8 ATQAGL+ Sbjct: 226 ATQAGLV 232>XP_006723474 Length = 2737 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 M+T+ GL+E Sbjct: 975 MSTEPGLLE 983>XP_005259362 Length = 2855 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 M+T+ GL+E Sbjct: 1093 MSTEPGLLE 1101>NP_115499 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ATQAGL 7 ATQAGL Sbjct: 105 ATQAGL 110>NP_954648 Length = 583 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ATQAGL 7 ATQAGL Sbjct: 55 ATQAGL 60>NP_954649 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ATQAGL 7 ATQAGL Sbjct: 105 ATQAGL 110>NP_001271271 Length = 177 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ATQAGL 7 ATQAGL Sbjct: 135 ATQAGL 140>NP_001193830 Length = 747 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 + T+AGL+E Sbjct: 143 VTTKAGLLE 151>NP_078838 Length = 1094 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MATQAGLM 8 +ATQ G+M Sbjct: 541 VATQGGIM 548>NP_001073333 Length = 747 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 + T+AGL+E Sbjct: 143 VTTKAGLLE 151>XP_005249957 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 + T+AGL+E Sbjct: 143 VTTKAGLLE 151>NP_006015 Length = 789 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MATQAGLME 9 + T+AGL+E Sbjct: 143 VTTKAGLLE 151Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.118 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 357,093 Number of extensions: 370 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |